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IVF0009903 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009903
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPolyprotein
Genome locationchr09:16545162..16545808
RNA-Seq ExpressionIVF0009903
SyntenyIVF0009903
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033915.1 polyprotein [Cucumis melo var. makuwa]5.60e-7169.27Show/hide
Query:  MKLDKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMK
        MK DKQ KTLT PE P LPRVDP                        E  R +      KE IGT S+R+VSNF MGSLNTISYDS K+L +K+YNTDMK
Subjt:  MKLDKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMK

Query:  NHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRSW
        NHYKRPSPPDLG DDL   FRSFD NNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFT NLRSW
Subjt:  NHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRSW

KAA0049723.1 polyprotein [Cucumis melo var. makuwa]1.42e-6766.48Show/hide
Query:  DKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMKNHY
        D Q KTL P E PGLPRVDP                        E  R +      KE   T S++++SNFGMGSLNTISYDS K   +KVYNT+MKNHY
Subjt:  DKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMKNHY

Query:  KRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRSW
        KRPSPPDLGWDDL   FRSFD NNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFT NLR+W
Subjt:  KRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRSW

KAA0054219.1 polyprotein [Cucumis melo var. makuwa]4.06e-6187.5Show/hide
Query:  MGSLNTISYDSKKVLSVKVYNTDMKNHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRN
        MGSLNTISYDS K+L +KVYN DMKNH KRPSPPDLGWDDLCP FRSFD NNIETWNIDGCSEGQ+MIIFQEMFVAATSYLRRM+QREIVDALT GF  N
Subjt:  MGSLNTISYDSKKVLSVKVYNTDMKNHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRN

Query:  LRSW
        LRSW
Subjt:  LRSW

KAA0068152.1 hypothetical protein E6C27_scaffold238G001190 [Cucumis melo var. makuwa]5.93e-6967.98Show/hide
Query:  MKLDKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMK
        MKLDK+ +TLTP E+ GLPRVDP                        E  R +      KE IGT S+R+VSNFGMG+LNTISYDS K+L +KVYNT+MK
Subjt:  MKLDKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMK

Query:  NHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRS
        NHYK+PSPPDLGWDDL P FRSFD+NNIETWNIDGCSEGQM IIFQEMFVAATSYLRRMSQREIVDALT GFT NLRS
Subjt:  NHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRS

TYK21071.1 polyprotein [Cucumis melo var. makuwa]5.15e-7468.16Show/hide
Query:  MKLDKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMK
        MKLDK+ +TLTP E+ GLPRVDP                        E  R +      KE IGT S+R+VSNFGMG+LNTISYDS K+L +KVYNT+MK
Subjt:  MKLDKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMK

Query:  NHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRSW
        NHYK+PSPPDLGWDDL P FRSFD+NNIETWNIDGCSEGQM IIFQEMFVAATSYLRRMSQREIVDALT GFT NLRSW
Subjt:  NHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRSW

TrEMBL top hitse value%identityAlignment
A0A5A7SXJ8 Polyprotein1.5e-5569.27Show/hide
Query:  MKLDKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMK
        MK DKQ KTLT PE P LPRVDP                        E  R +      KE IGT S+R+VSNF MGSLNTISYDS K+L +K+YNTDMK
Subjt:  MKLDKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMK

Query:  NHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRSW
        NHYKRPSPPDLG DDL   FRSFD NNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFT NLRSW
Subjt:  NHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRSW

A0A5A7UL40 Polyprotein2.8e-4687.5Show/hide
Query:  MGSLNTISYDSKKVLSVKVYNTDMKNHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRN
        MGSLNTISYDS K+L +KVYN DMKNH KRPSPPDLGWDDLCP FRSFD NNIETWNIDGCSEGQ+MIIFQEMFVAATSYLRRM+QREIVDALT GF  N
Subjt:  MGSLNTISYDSKKVLSVKVYNTDMKNHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRN

Query:  LRSW
        LRSW
Subjt:  LRSW

A0A5A7VII9 Uncharacterized protein3.9e-5667.98Show/hide
Query:  MKLDKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMK
        MKLDK+ +TLTP E+ GLPRVDP                        E  R +      KE IGT S+R+VSNFGMG+LNTISYDS K+L +KVYNT+MK
Subjt:  MKLDKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMK

Query:  NHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRS
        NHYK+PSPPDLGWDDL P FRSFD+NNIETWNIDGCSEGQM IIFQEMFVAATSYLRRMSQREIVDALT GFT NLRS
Subjt:  NHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRS

A0A5D3CLG3 Polyprotein1.4e-5366.48Show/hide
Query:  DKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMKNHY
        D Q KTL P E PGLPRVDP                        E  R +      KE   T S++++SNFGMGSLNTISYDS K   +KVYNT+MKNHY
Subjt:  DKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMKNHY

Query:  KRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRSW
        KRPSPPDLGWDDL   FRSFD NNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFT NLR+W
Subjt:  KRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRSW

A0A5D3DBQ3 Polyprotein2.1e-5768.16Show/hide
Query:  MKLDKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMK
        MKLDK+ +TLTP E+ GLPRVDP                        E  R +      KE IGT S+R+VSNFGMG+LNTISYDS K+L +KVYNT+MK
Subjt:  MKLDKQGKTLTPPEQPGLPRVDP------------------------ETIRNIH----FKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMK

Query:  NHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRSW
        NHYK+PSPPDLGWDDL P FRSFD+NNIETWNIDGCSEGQM IIFQEMFVAATSYLRRMSQREIVDALT GFT NLRSW
Subjt:  NHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRSW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTGGACAAGCAGGGAAAAACTCTAACTCCTCCAGAGCAGCCAGGATTACCTAGGGTTGACCCCGAAACTATTAGAAACATCCATTTTAAGGAAAAAATAGGAAC
CTTGTCCCAAAGGAAAGTTAGTAATTTTGGAATGGGAAGCCTCAATACAATTAGTTATGATTCTAAAAAAGTTCTTTCTGTCAAAGTTTATAACACTGATATGAAGAATC
ACTACAAAAGGCCATCACCACCAGATCTTGGATGGGATGACTTATGCCCAGGTTTTCGATCATTTGATAGAAATAATATCGAAACTTGGAACATCGATGGATGTTCTGAA
GGACAGATGATGATCATTTTTCAAGAAATGTTTGTTGCTGCAACAAGCTATCTTAGAAGAATGAGTCAAAGAGAGATTGTTGACGCCTTAACTGCAGGGTTTACACGAAA
CCTTAGGAGTTGGACGTTGTTTTGGAAAAAACAGAACAAGACCCTAATGGCGATGTTGTTACCATCCAGCCAAACTCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTGGACAAGCAGGGAAAAACTCTAACTCCTCCAGAGCAGCCAGGATTACCTAGGGTTGACCCCGAAACTATTAGAAACATCCATTTTAAGGAAAAAATAGGAAC
CTTGTCCCAAAGGAAAGTTAGTAATTTTGGAATGGGAAGCCTCAATACAATTAGTTATGATTCTAAAAAAGTTCTTTCTGTCAAAGTTTATAACACTGATATGAAGAATC
ACTACAAAAGGCCATCACCACCAGATCTTGGATGGGATGACTTATGCCCAGGTTTTCGATCATTTGATAGAAATAATATCGAAACTTGGAACATCGATGGATGTTCTGAA
GGACAGATGATGATCATTTTTCAAGAAATGTTTGTTGCTGCAACAAGCTATCTTAGAAGAATGAGTCAAAGAGAGATTGTTGACGCCTTAACTGCAGGGTTTACACGAAA
CCTTAGGAGTTGGACGTTGTTTTGGAAAAAACAGAACAAGACCCTAATGGCGATGTTGTTACCATCCAGCCAAACTCAGTAA
Protein sequenceShow/hide protein sequence
MKLDKQGKTLTPPEQPGLPRVDPETIRNIHFKEKIGTLSQRKVSNFGMGSLNTISYDSKKVLSVKVYNTDMKNHYKRPSPPDLGWDDLCPGFRSFDRNNIETWNIDGCSE
GQMMIIFQEMFVAATSYLRRMSQREIVDALTAGFTRNLRSWTLFWKKQNKTLMAMLLPSSQTQ