CuGenDBv2

Gene ID	IVF0009923
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	30S ribosomal protein S3, chloroplastic
Genome location	chr11:25855589..25855813
RNA-Seq Expression	IVF0009923
Synteny	IVF0009923
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001351 - Ribosomal protein S3, C-terminal IPR005704 - Ribosomal protein S3, bacterial-type IPR018280 - Ribosomal protein S3, conserved site IPR036419 - Ribosomal protein S3, C-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8649350.1 hypothetical protein Csa_014867, partial [Cucumis sativus]

2.95e-46

97.3

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
        MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVP+QTIRAKIDYCCYPVRTIYG+LGIKIWIFVDEQ
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

YP_009346519.1 ribosomal protein S3 [Cucumis x hytivus]

1.44e-44

98.65

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
        MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVP+QTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

YP_009447489.1 ribosomal protein S3 [Cucurbita maxima]

1.44e-44

98.65

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
        MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVP+QTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

YP_009752281.1 ribosomal protein S3 [Trichosanthes baviensis]

1.44e-44

98.65

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
        MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVP+QTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

YP_009752619.1 ribosomal protein S3 [Trichosanthes homophylla]

1.44e-44

98.65

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
        MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVP+QTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU44 30S ribosomal protein S3, chloroplastic

8.9e-34

98.65

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
        MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVP+QTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

A0A249RZG7 30S ribosomal protein S3, chloroplastic

8.9e-34

98.65

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
        MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVP+QTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

A0A2Z2CGI2 30S ribosomal protein S3, chloroplastic

8.9e-34

98.65

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
        MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVP+QTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

A0A6H0ESU0 30S ribosomal protein S3, chloroplastic

8.9e-34

98.65

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
        MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVP+QTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

A0A6M3RWJ0 30S ribosomal protein S3, chloroplastic

8.9e-34

98.65

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
        MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVP+QTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

SwissProt top hits

e value

%identity

Alignment

Q06GV8 30S ribosomal protein S3, chloroplastic

7.2e-33

93.24

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
        MKKAIELTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVP+QTIRAKID+C Y VRTIYGVLGIKIWIFVDEQ
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

Q0G9I0 30S ribosomal protein S3, chloroplastic

7.2e-33

93.24

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
        MKKAIELTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVP+QTIRAKID+C Y VRTIYGVLGIKIWIFVDEQ
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

Q332T8 30S ribosomal protein S3, chloroplastic

3.2e-33

94.44

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVD
        MKKAIELTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVP+QTIRAKIDYCCY VRTIYGVLGIKIWIF+D
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVD

Q4VZN0 30S ribosomal protein S3, chloroplastic

3.1e-36

97.3

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
        MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVP+QTIRAKIDYCCYPVRTIYG+LGIKIWIFVDEQ
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

Q8S8V5 30S ribosomal protein S3, chloroplastic

9.4e-33

90.54

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
        MKKAIELTEQA TKGIQ+QIAGRIDGKEIARVEWIREGRVP+QTIRAKIDYC Y VRTIYGVLGIKIWIF+DE+
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

Arabidopsis top hits

e value

%identity

Alignment

ATCG00800.1 structural constituent of ribosome

8.8e-34

91.89

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Query:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
        MKKAIELTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVP+QTI AKIDYC Y VRTIYGVLGIKIWIFVDE+
Subjt:  MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

ATMG00090.1 structural constituent of ribosome;protein binding

7.2e-04

33.9

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Query:  GTKGIQVQIAGRI-DGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWI
        G +GI++  +GR+ D  E A+ +  +  +        KIDY    V T YG+ G+K+WI
Subjt:  GTKGIQVQIAGRI-DGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWI

Sequences

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CDS sequence

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ATGAAAAAAGCTATTGAATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGA
AGGACGGGTTCCTGTACAAACCATTCGAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGGTATTAGGCATCAAAATTTGGATATTTGTAGACGAAC
AATAA

mRNA sequence

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Protein sequence

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MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPVQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

IVF0009923 (gene) of Melon (IVF77) v1 genome