CuGenDBv2

Gene ID	IVF0009963
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Translation initiation factor IF-1, chloroplastic
Genome location	chr07:4199667..4199905
RNA-Seq Expression	IVF0009963
Synteny	IVF0009963
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0009507 - chloroplast (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

A5J1W9.1 RecName: Full=Translation initiation factor IF-1, chloroplastic [Cucumis sativus]

6.84e-31

74.67

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Query:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND
        MK+QKRISE  ITES TNDMFW+CL NEDPILGYVSGRI+H          +SCYDST+TRRRIIYRLRNKDSND
Subjt:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND

ASY96339.1 translation initiation factor 1 [Cucumis melo subsp. agrestis]

1.60e-19

90.24

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Query:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH
        MK+QKRISEG ITESPTNDMFW+CL NEDPILGYVSGRIQH
Subjt:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH

NP_054969.2 translation initiation factor 1 [Spinacia oleracea]

4.67e-18

60.76

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Query:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH--------------ISCYDSTKTRRRIIYRLRNKDSND
        MK+QK I EG ITES  N MFW+ L NEDPILGYVSGRI+               +S YDST  R RIIYRLRNKDSND
Subjt:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH--------------ISCYDSTKTRRRIIYRLRNKDSND

QJA16179.1 translational initiation factor 1 [Siraitia grosvenorii]

4.29e-25

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Query:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND
        MK+QKRI EG ITES  N MFW+CL N DPILGYVSGRI+H          +S YDST+TR RIIYRLRNKDSND
Subjt:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND

YP_004841818.1 translational initiation factor 1 [Cucumis melo subsp. melo]

2.90e-32

77.33

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Query:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND
        MK+QKRISEG ITES TNDMFW+CL NEDPILGYVSGRIQH          +SCYDST+TRRRIIYRLRNKDSND
Subjt:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU46 translational initiation factor 1

9.5e-24

77.33

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Query:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND
        MK+QKRISEG ITES TNDMFW+CL NEDPILGYVSGRIQH          +SCYDST+TRRRIIYRLRNKDSND
Subjt:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND

A0A1X9Q1P3 Translation initiation factor 1

1.1e-22

74.67

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Query:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND
        MK+QKRISE  ITES TNDMFW+CL NEDPILGYVSGRI+H          +SCYDST+TRRRIIYRLRNKDSND
Subjt:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND

A0A343UM67 InfA

1.1e-22

74.67

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Query:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND
        MK+QKRISE  ITES TNDMFW+CL NEDPILGYVSGRI+H          +SCYDST+TRRRIIYRLRNKDSND
Subjt:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND

A0A6M8YGU1 Translational initiation factor 1

9.5e-24

77.33

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Query:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND
        MK+QKRISEG ITES TNDMFW+CL NEDPILGYVSGRIQH          +SCYDST+TRRRIIYRLRNKDSND
Subjt:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND

G3ETT2 Translational initiation factor 1

9.5e-24

77.33

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Query:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND
        MK+QKRISEG ITES TNDMFW+CL NEDPILGYVSGRIQH          +SCYDST+TRRRIIYRLRNKDSND
Subjt:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND

SwissProt top hits

e value

%identity

Alignment

A1XFZ0 Translation initiation factor IF-1, chloroplastic

2.3e-14

58.23

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Query:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQ--------------HISCYDSTKTRRRIIYRLRNKDSND
        MK+QK I EG ITES  N MFW+ L NED +LGYVSGRI+               +S YDS  TR RIIYRLRNKDSND
Subjt:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQ--------------HISCYDSTKTRRRIIYRLRNKDSND

A5J1W9 Translation initiation factor IF-1, chloroplastic

2.9e-25

74.67

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Query:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND
        MK+QKRISE  ITES TNDMFW+CL NEDPILGYVSGRI+H          +SCYDST+TRRRIIYRLRNKDSND
Subjt:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKTRRRIIYRLRNKDSND

P08698 Translation initiation factor IF-1, chloroplastic

1.6e-15

60.76

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Query:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQ--------------HISCYDSTKTRRRIIYRLRNKDSND
        MK+QK I EG ITES  N MFW+ L NEDPILGYVSGRI+               +S YDS  TR RIIYRLRNKDSND
Subjt:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQ--------------HISCYDSTKTRRRIIYRLRNKDSND

Q6EW17 Translation initiation factor IF-1, chloroplastic

2.3e-14

58.23

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Query:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQ--------------HISCYDSTKTRRRIIYRLRNKDSND
        MK+QK I EG ITES  N MFW+ L NED +LGYVSGRI+               +S YDS  TR RIIYRLRNKDSND
Subjt:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQ--------------HISCYDSTKTRRRIIYRLRNKDSND

Q95GN8 Translation initiation factor IF-1, chloroplastic

2.3e-14

58.23

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Query:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQ--------------HISCYDSTKTRRRIIYRLRNKDSND
        MK+QK I EG ITES  N MFW+ L NED +LGYVSGRI+               +S YDS  TR RIIYRLRNKDSND
Subjt:  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQ--------------HISCYDSTKTRRRIIYRLRNKDSND

Arabidopsis top hits

e value

%identity

Alignment

AT4G11175.1 Nucleic acid-binding, OB-fold-like protein

2.3e-06

40.28

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Query:  KRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQ--------------HISCYDSTKTRRRIIYRLRNKD
        K + EG +TES  N MF + L N D ILGY+ G+I+               +S YDSTK   RII+R+ ++D
Subjt:  KRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQ--------------HISCYDSTKTRRRIIYRLRNKD

Sequences

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CDS sequence

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ATGAAAAAGCAAAAAAGGATTTCTGAAGGTTTCATTACTGAATCACCTACCAATGATATGTTTTGGATTTGTTTATATAATGAGGATCCAATTCTAGGTTACGTTTCAGG
AAGGATTCAACATATAAGTTGTTATGATTCAACCAAGACTAGAAGACGTATAATTTATAGACTACGAAACAAAGATTCGAATGATTAG

mRNA sequence

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ATGAAAAAGCAAAAAAGGATTTCTGAAGGTTTCATTACTGAATCACCTACCAATGATATGTTTTGGATTTGTTTATATAATGAGGATCCAATTCTAGGTTACGTTTCAGG
AAGGATTCAACATATAAGTTGTTATGATTCAACCAAGACTAGAAGACGTATAATTTATAGACTACGAAACAAAGATTCGAATGATTAG

Protein sequence

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MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHISCYDSTKTRRRIIYRLRNKDSND

IVF0009963 (gene) of Melon (IVF77) v1 genome