CuGenDBv2

Gene ID	IVF0010147
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr08:29323300..29323704
RNA-Seq Expression	IVF0010147
Synteny	IVF0010147
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0045141.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.12e-88

99.24

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Query:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM
        MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM
Subjt:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM

Query:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHV
        KKCIISRDVTFNETEMPYCVKEQQKQQTGDH+
Subjt:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHV

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

5.65e-79

91.04

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Query:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM
        ME TRCLLTNASLPLKFWGEAAQT CYLINRS S ALNLKTP EVW GKAPSL+HL VFGCT Y HVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EKGM
Subjt:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM

Query:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
         KCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
Subjt:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

5.20e-79

91.04

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Query:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM
        ME TRCLLTNASLPLKFWGEAAQT CYLINRS S ALNLKTP EVW GKAPSL+HL VFGCT Y HVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EKGM
Subjt:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM

Query:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
         KCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
Subjt:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT

TYK13826.1 putative polyprotein [Cucumis melo var. makuwa]

2.52e-79

91.04

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Query:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM
        ME TRCLLTNASLPLKFWGEAAQT CYLINRS S ALNLKTP EVW GKAPSL+HL VFGCT Y HVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EKGM
Subjt:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM

Query:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
         KCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
Subjt:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

6.04e-79

91.04

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Query:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM
        ME TRCLLTNASLPLKFWGEAAQT CYLINRS S ALNLKTP EVW GKAPSL+HL VFGCT Y HVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EKGM
Subjt:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM

Query:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
         KCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
Subjt:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TUE4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.9e-74

99.24

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Query:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM
        MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM
Subjt:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM

Query:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHV
        KKCIISRDVTFNETEMPYCVKEQQKQQTGDH+
Subjt:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHV

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

5.8e-68

91.04

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Query:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM
        ME TRCLLTNASLPLKFWGEAAQT CYLINRS S ALNLKTP EVW GKAPSL+HL VFGCT Y HVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EKGM
Subjt:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM

Query:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
         KCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
Subjt:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT

A0A5A7UB25 Putative gag-pol polyprotein

5.8e-68

91.04

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Query:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM
        ME TRCLLTNASLPLKFWGEAAQT CYLINRS S ALNLKTP EVW GKAPSL+HL VFGCT Y HVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EKGM
Subjt:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM

Query:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
         KCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
Subjt:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT

A0A5D3CTV2 Putative polyprotein

5.8e-68

91.04

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Query:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM
        ME TRCLLTNASLPLKFWGEAAQT CYLINRS S ALNLKTP EVW GKAPSL+HL VFGCT Y HVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EKGM
Subjt:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM

Query:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
         KCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
Subjt:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT

A0A5D3DNU1 Putative gag-pol polyprotein

5.8e-68

91.04

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Query:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM
        ME TRCLLTNASLPLKFWGEAAQT CYLINRS S ALNLKTP EVW GKAPSL+HL VFGCT Y HVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EKGM
Subjt:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGM

Query:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
         KCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT
Subjt:  KKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVT

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.5e-24

43.94

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Query:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHV---KDGKLNKRALKCMFIGYPQGVKGYKLWCLE
        +E  R +L  A LP  FWGEA QT CYLINRS S  L  + P  VW  K  S  HL VFGC  + HV   +  KL+ +++ C+FIGY     GY+LW  +
Subjt:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHV---KDGKLNKRALKCMFIGYPQGVKGYKLWCLE

Query:  KGMKKCIISRDVTFNETEMPYCVKEQQKQQTG
           KK I SRDV F E+E+       +K + G
Subjt:  KGMKKCIISRDVTFNETEMPYCVKEQQKQQTG

P92512 Uncharacterized mitochondrial protein AtMg00710

4.8e-11

39.74

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Query:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALK
        +E  R +L    LP  F  +AA T  ++IN+  S A+N   P EVW    P+  +L  FGC  Y H  +GKL  RA K
Subjt:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALK

Arabidopsis top hits

e value

%identity

Alignment

ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

3.4e-12

39.74

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Query:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALK
        +E  R +L    LP  F  +AA T  ++IN+  S A+N   P EVW    P+  +L  FGC  Y H  +GKL  RA K
Subjt:  MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALK

Sequences

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CDS sequence

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ATGGAACATACAAGGTGTCTCTTAACTAATGCTTCATTACCATTGAAATTTTGGGGGGAAGCTGCCCAAACAACGTGTTATCTCATTAATAGGAGTCTTTCTAACGCTTT
AAACTTAAAGACTCCTCATGAGGTTTGGATAGGTAAAGCTCCAAGTTTAGACCATCTCGGAGTGTTTGGATGCACAACTTATACTCATGTTAAAGATGGAAAACTGAACA
AGAGGGCACTAAAATGCATGTTTATTGGTTATCCTCAGGGTGTCAAAGGTTATAAACTTTGGTGCTTGGAAAAAGGGATGAAAAAATGCATTATCAGTAGAGATGTAACT
TTTAATGAGACAGAAATGCCTTACTGTGTTAAAGAGCAGCAGAAACAACAGACGGGTGATCATGTTGTGACATAA

mRNA sequence

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Protein sequence

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MEHTRCLLTNASLPLKFWGEAAQTTCYLINRSLSNALNLKTPHEVWIGKAPSLDHLGVFGCTTYTHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKGMKKCIISRDVT
FNETEMPYCVKEQQKQQTGDHVVT

IVF0010147 (gene) of Melon (IVF77) v1 genome