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IVF0010259 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010259
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr02:17137261..17137656
RNA-Seq ExpressionIVF0010259
SyntenyIVF0010259
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043186.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]5.58e-1045.45Show/hide
Query:  ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS--KSHFKESRNQKNKSKVECTFCHKRGHLRQDC
        ALKY R+ IT + VI+A+K+KELEL ++ K  +  E LFSKGK+  + + K  R+ K+K  ++C  CHK GH +++C
Subjt:  ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS--KSHFKESRNQKNKSKVECTFCHKRGHLRQDC

KAA0065687.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.25e-1079.07Show/hide
Query:  MALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKG
        MAL+Y RQKITT  VISAI+T+EL+LNSQR+ QSNGEGLFSKG
Subjt:  MALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKG

TYK12279.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]5.58e-1045.45Show/hide
Query:  ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS--KSHFKESRNQKNKSKVECTFCHKRGHLRQDC
        ALKY R+ IT + VI+A+K+KELEL ++ K  +  E LFSKGK+  + + K  R+ K+K  ++C  CHK GH +++C
Subjt:  ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS--KSHFKESRNQKNKSKVECTFCHKRGHLRQDC

TYK27723.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.19e-0842.31Show/hide
Query:  ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS---KSHFKESRNQKNKSKVECTFCHKRGHLRQDC
        +LKY R+ IT + VI+A+K+KELEL ++ K  +  E LFSKG +   K+  K  R+ ++K  ++C  CHK GH +++C
Subjt:  ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS---KSHFKESRNQKNKSKVECTFCHKRGHLRQDC

XP_038885928.1 uncharacterized protein LOC120076236 [Benincasa hispida]1.18e-0839.32Show/hide
Query:  ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKSKSHFKESRNQKNKSKVECTFCHKRGHLRQDCFFLKKKQNQKKQKEKQQEEPKAEAS
        ALKY R++ITT  +ISA+  KELEL   +K Q  GEG F KG +K     +  + N++   C     R  +++DC+ LK+K NQ+ +  KQ E    E S
Subjt:  ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKSKSHFKESRNQKNKSKVECTFCHKRGHLRQDCFFLKKKQNQKKQKEKQQEEPKAEAS

Query:  VVDQTPFMYSDALTISK
        +V      YSDAL  ++
Subjt:  VVDQTPFMYSDALTISK

TrEMBL top hitse value%identityAlignment
A0A2P5AXR9 Zinc finger, CCHC-type8.1e-0643.33Show/hide
Query:  ALKYER-QKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS-KSHFKESRNQ---KNKSKVECTFCHKRGHLRQDCFFLKKKQNQK
        A+ Y R Q IT D+V SA+K KEL    + K ++ GEGL ++G+S K   K  RN+   K+K +++C  CHK GH ++DC   KKK ++K
Subjt:  ALKYER-QKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS-KSHFKESRNQ---KNKSKVECTFCHKRGHLRQDCFFLKKKQNQK

A0A5A7TMB4 Pentatricopeptide repeat-containing protein3.6e-0630Show/hide
Query:  ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS--KSHFKESRNQKNKSKVECTFCHKRGHLRQDC--------------------FFL
        ALKY R+ IT + VI+A+K+KELEL ++ K  +  E LFSKGK+  + + K  R+ K+K  ++C  CHK GH +++C                       
Subjt:  ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS--KSHFKESRNQKNKSKVECTFCHKRGHLRQDC--------------------FFL

Query:  KKKQNQKKQKEKQQEEPKAEASVVDQTPFMYSDAL-TISKNSMKTEGNEE
         + +N +++  ++  E   +   V    F Y++ L   +K +M+ +  EE
Subjt:  KKKQNQKKQKEKQQEEPKAEASVVDQTPFMYSDAL-TISKNSMKTEGNEE

A0A5D3CAI4 Retrovirus-related Pol polyprotein from transposon TNT 1-948.7e-0879.07Show/hide
Query:  MALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKG
        MAL+Y RQKITT  VISAI+T+EL+LNSQR+ QSNGEGLFSKG
Subjt:  MALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKG

A0A5D3CPM8 Pentatricopeptide repeat-containing protein3.6e-0630Show/hide
Query:  ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS--KSHFKESRNQKNKSKVECTFCHKRGHLRQDC--------------------FFL
        ALKY R+ IT + VI+A+K+KELEL ++ K  +  E LFSKGK+  + + K  R+ K+K  ++C  CHK GH +++C                       
Subjt:  ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS--KSHFKESRNQKNKSKVECTFCHKRGHLRQDC--------------------FFL

Query:  KKKQNQKKQKEKQQEEPKAEASVVDQTPFMYSDAL-TISKNSMKTEGNEE
         + +N +++  ++  E   +   V    F Y++ L   +K +M+ +  EE
Subjt:  KKKQNQKKQKEKQQEEPKAEASVVDQTPFMYSDAL-TISKNSMKTEGNEE

A0A5D3DVM0 Retrovirus-related Pol polyprotein from transposon TNT 1-944.3e-0742.31Show/hide
Query:  ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS---KSHFKESRNQKNKSKVECTFCHKRGHLRQDC
        +LKY R+ IT + VI+A+K+KELEL ++ K  +  E LFSKG +   K+  K  R+ ++K  ++C  CHK GH +++C
Subjt:  ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS---KSHFKESRNQKNKSKVECTFCHKRGHLRQDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTCAAATATGAAAGGCAAAAAATCACCACAGATGATGTAATATCAGCAATAAAAACCAAAGAACTAGAGTTAAATTCACAGAGGAAATATCAATCAAATGGTGA
AGGTTTATTTTCAAAAGGTAAAAGCAAAAGCCACTTTAAAGAAAGCAGGAATCAAAAGAATAAGTCAAAGGTGGAATGCACATTTTGCCACAAAAGGGGACATCTTAGAC
AAGACTGTTTCTTTCTAAAGAAAAAGCAAAATCAAAAGAAACAAAAGGAAAAACAACAAGAAGAACCAAAGGCAGAAGCATCGGTAGTAGATCAAACTCCATTTATGTAT
TCAGATGCCTTAACCATCTCAAAAAATTCAATGAAAACAGAAGGCAATGAAGAAACTCATGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTCAAATATGAAAGGCAAAAAATCACCACAGATGATGTAATATCAGCAATAAAAACCAAAGAACTAGAGTTAAATTCACAGAGGAAATATCAATCAAATGGTGA
AGGTTTATTTTCAAAAGGTAAAAGCAAAAGCCACTTTAAAGAAAGCAGGAATCAAAAGAATAAGTCAAAGGTGGAATGCACATTTTGCCACAAAAGGGGACATCTTAGAC
AAGACTGTTTCTTTCTAAAGAAAAAGCAAAATCAAAAGAAACAAAAGGAAAAACAACAAGAAGAACCAAAGGCAGAAGCATCGGTAGTAGATCAAACTCCATTTATGTAT
TCAGATGCCTTAACCATCTCAAAAAATTCAATGAAAACAGAAGGCAATGAAGAAACTCATGACTGA
Protein sequenceShow/hide protein sequence
MALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKSKSHFKESRNQKNKSKVECTFCHKRGHLRQDCFFLKKKQNQKKQKEKQQEEPKAEASVVDQTPFMY
SDALTISKNSMKTEGNEETHD