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IVF0010336 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010336
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionAP complex subunit sigma
Genome locationchr05:9394098..9395863
RNA-Seq ExpressionIVF0010336
SyntenyIVF0010336
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0005794 - Golgi apparatus (cellular component)
GO:0030117 - membrane coat (cellular component)
GO:0031410 - cytoplasmic vesicle (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KHG05339.1 AP-1 complex subunit sigma-2 -like protein [Gossypium arboreum]2.03e-3668.27Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        +IL+R PKLCNFV+WRG KVVYK Y           DDNELE +EIIHHY EILD YF SV E   VCELDLIFNFHKAYYILDELL+ GELQESSKK  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKLL
         +L+
Subjt:  KKLL

XP_008462009.1 PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo]4.32e-3669.23Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        MIL+R PKLCNFVEWRGLK VYK Y           DDNELE +EIIHHY EILD YF SV      CELDLIFNFHKAYYILDELLI GELQESSKK  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKLL
         +L+
Subjt:  KKLL

XP_022928147.1 AP-1 complex subunit sigma-2 isoform X3 [Cucurbita moschata]6.99e-3668.27Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        MIL+R PKLCNFVEWRGLK VYK Y           +DNELE +EIIHHY EILD YF SV      CELDLIFNFHKAYYILDELLI GELQESSKK  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKLL
         +L+
Subjt:  KKLL

XP_022989480.1 AP-1 complex subunit sigma-2 isoform X2 [Cucurbita maxima]1.75e-3568.27Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        MIL+R PKLCNFVEWRGLK VYK Y           +DNELE +EIIHHY EILD YF SV      CELDLIFNFHKAYYILDELLI GELQESSKK  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKLL
         +L+
Subjt:  KKLL

XP_038888262.1 AP-1 complex subunit sigma-2 [Benincasa hispida]6.13e-3669.23Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        MIL+R PKLCNFVEWRGLK VYK Y           DDNELE +EIIHHY EILD YF SV      CELDLIFNFHKAYYILDELLI GELQESSKK  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKLL
         +L+
Subjt:  KKLL

TrEMBL top hitse value%identityAlignment
A0A0B0N0U3 AP-1 complex subunit sigma-2-like protein5.1e-2762.5Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        +IL+R PKLCNFV+WRG KVVYK Y           DDNELE +EIIHHY EILD YF SV E   VCELDLIFNFHKAYYILDELL+ GELQESSKK  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKL------LIETNKKNSKN
         +L      L+ET K+ + +
Subjt:  KKL------LIETNKKNSKN

A0A1S3CGG1 AP complex subunit sigma1.1e-2663.33Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        MIL+R PKLCNFVEWRGLK VYK Y           DDNELE +EIIHHY EILD YF S      VCELDLIFNFHKAYYILDELLI GELQESSKK  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKL------LIETNKKNSKN
         +L      L+ET K+ + +
Subjt:  KKL------LIETNKKNSKN

A0A251L925 AP complex subunit sigma1.9e-2668.27Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        +IL R PKLCNFVEWRG KVVYK Y           DDNELE +EIIHHY EILD YF S      VCELDLIFNFHKAYYILDELLI GELQESSKK  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKLL
         +L+
Subjt:  KKLL

A0A5D3D5G1 AP-1 complex subunit sigma-21.1e-2663.33Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        MIL+R PKLCNFVEWRGLK VYK Y           DDNELE +EIIHHY EILD YF S      VCELDLIFNFHKAYYILDELLI GELQESSKK  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKL------LIETNKKNSKN
         +L      L+ET K+ + +
Subjt:  KKL------LIETNKKNSKN

P93078 AP complex subunit sigma1.5e-2668.27Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        +IL R PKLCNFVEWRG KVVYK Y           DDNELE +EIIHHY EILD YF S      VCELDLIFNFHKAYYILDELLI GELQESSKK  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKLL
         +L+
Subjt:  KKLL

SwissProt top hitse value%identityAlignment
B0G185 AP-1 complex subunit sigma-28.7e-2455.77Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        M+L+R PKLCNF+EW+  K+++K Y           +DNEL  +EIIHH+ EILD YF +      VCELDLIFNFHKAYYILDEL++ GELQE+SKK  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKLL
         +L+
Subjt:  KKLL

O23685 AP-1 complex subunit sigma-22.0e-2866.35Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        +IL+R PKLCNFVEWRG KVVYK Y           +DNELE +EIIHHY EILD YF S      VCELDLIFNFHKAYYILDELLI GELQESSKK  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKLL
         +++
Subjt:  KKLL

P56377 AP-1 complex subunit sigma-23.1e-2153.4Show/hide
Query:  ILDRRPKLCNFVEWRGLKVVYKWYFM---------DDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRRK
        +L R+PK+C+F+EWR LK+VYK Y            DNEL  +EIIH Y E+LD YF S      VCELD+IFNF KAY+ILDE L+ GE+QE+SKK   
Subjt:  ILDRRPKLCNFVEWRGLKVVYKWYFM---------DDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRRK

Query:  KLL
        K +
Subjt:  KLL

Q3ZBS3 AP-1 complex subunit sigma-23.1e-2153.4Show/hide
Query:  ILDRRPKLCNFVEWRGLKVVYKWYFM---------DDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRRK
        +L R+PK+C+F+EWR LK+VYK Y            DNEL  +EIIH Y E+LD YF S      VCELD+IFNF KAY+ILDE L+ GE+QE+SKK   
Subjt:  ILDRRPKLCNFVEWRGLKVVYKWYFM---------DDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRRK

Query:  KLL
        K +
Subjt:  KLL

Q8LEZ8 AP-1 complex subunit sigma-19.9e-2865.38Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYFM---------DDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        +IL+R PKLCNF+EWRG KVVYK Y            DNELE +EIIHHY EILD YF S      VCELDLIFNFHKAYYILDELLI GELQESSKK  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYFM---------DDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKLL
         +++
Subjt:  KKLL

Arabidopsis top hitse value%identityAlignment
AT1G47830.1 SNARE-like superfamily protein8.1e-1744.95Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        ++++R  K  NFVE+R  KV+Y+ Y          + DNEL  +E IH + EILD +FS+      VCELDL+FNFHK Y ILDE ++ GELQE+SK+  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKLLIETNK
         + + E  K
Subjt:  KKLLIETNK

AT2G17380.1 associated protein 197.1e-2965.38Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYFM---------DDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        +IL+R PKLCNF+EWRG KVVYK Y            DNELE +EIIHHY EILD YF S      VCELDLIFNFHKAYYILDELLI GELQESSKK  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYFM---------DDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKLL
         +++
Subjt:  KKLL

AT2G19790.1 SNARE-like superfamily protein2.5e-1038.95Show/hide
Query:  LDRRPKLCNFVEWRGLKVVYKWY----FM-----DDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSK
        L R  + C+FVE R  K+VY+ Y    FM     D+NEL  +E IH   E +D      + F  VCELD++F+  KA+++L+E+++ G + E+SK
Subjt:  LDRRPKLCNFVEWRGLKVVYKWY----FM-----DDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSK

AT4G35410.1 Clathrin adaptor complex small chain family protein1.7e-1964.1Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHK
        +IL+R PKLCNFVEWRG KVVYK Y           +DNELE +EIIHHY EILD YF S      VCELDLIFNFHK
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHK

AT4G35410.2 Clathrin adaptor complex small chain family protein1.4e-2966.35Show/hide
Query:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR
        +IL+R PKLCNFVEWRG KVVYK Y           +DNELE +EIIHHY EILD YF S      VCELDLIFNFHKAYYILDELLI GELQESSKK  
Subjt:  MILDRRPKLCNFVEWRGLKVVYKWYF---------MDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRR

Query:  KKLL
         +++
Subjt:  KKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCTAGATCGAAGACCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTGAAAGTTGTTTATAAATGGTACTTCATGGATGACAATGAATTAGAGGGCATTGAAAT
TATTCATCATTATGATGAGATTTTGGATTGTTACTTCAGCAGTGTAAGAGAATTCAATAAGGTTTGTGAATTGGATTTGATATTCAACTTTCACAAGGCCTATTATATAT
TGGATGAGCTTCTAATTGTAGGCGAACTCCAAGAATCAAGCAAGAAAAGGAGGAAAAAGTTGTTAATTGAAACCAACAAGAAAAATTCAAAGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTCTAGATCGAAGACCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTGAAAGTTGTTTATAAATGGTACTTCATGGATGACAATGAATTAGAGGGCATTGAAAT
TATTCATCATTATGATGAGATTTTGGATTGTTACTTCAGCAGTGTAAGAGAATTCAATAAGGTTTGTGAATTGGATTTGATATTCAACTTTCACAAGGCCTATTATATAT
TGGATGAGCTTCTAATTGTAGGCGAACTCCAAGAATCAAGCAAGAAAAGGAGGAAAAAGTTGTTAATTGAAACCAACAAGAAAAATTCAAAGAACTGA
Protein sequenceShow/hide protein sequence
MILDRRPKLCNFVEWRGLKVVYKWYFMDDNELEGIEIIHHYDEILDCYFSSVREFNKVCELDLIFNFHKAYYILDELLIVGELQESSKKRRKKLLIETNKKNSKN