; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0010345 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010345
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr09:12853606..12854117
RNA-Seq ExpressionIVF0010345
SyntenyIVF0010345
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040333.1 reverse transcriptase [Cucumis melo var. makuwa]6.75e-1962.35Show/hide
Query:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQL-VLYKA
        MP  LPKSLP +  ID+EIKLV G KPPAKNAY MAPPELAEL+KQLDELL A FIRP            +KKDG+L+L ++Y+A
Subjt:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQL-VLYKA

KAA0041960.1 reverse transcriptase [Cucumis melo var. makuwa]5.43e-1961.73Show/hide
Query:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQLVL
        MP  LPKSLP +  ID+EI+LV G KPPAKNAY MAPPELAEL+KQLDELL A FIRP            +KKDG+L+L +
Subjt:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQLVL

KAA0052270.1 uncharacterized protein E6C27_scaffold207G00960 [Cucumis melo var. makuwa]9.03e-1962.2Show/hide
Query:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQLVLY
        MP  LPKSLP Q  ID+EI+LV G KPPAKNAY MAPPELAEL+KQLDELL A FIRP            +KKDG+L+L ++
Subjt:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQLVLY

KAA0062359.1 uncharacterized protein E6C27_scaffold154G001260 [Cucumis melo var. makuwa]3.57e-27100Show/hide
Query:  LPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRPEK
        LPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRPEK
Subjt:  LPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRPEK

TYK23369.1 reverse transcriptase [Cucumis melo var. makuwa]6.75e-1962.35Show/hide
Query:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQL-VLYKA
        MP  LPKSLP +  ID+EIKLV G KPPAKNAY MAPPELAEL+KQLDELL A FIRP            +KKDG+L+L ++Y+A
Subjt:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQL-VLYKA

TrEMBL top hitse value%identityAlignment
A0A5A7TB80 Reverse transcriptase4.4e-1662.35Show/hide
Query:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQL-VLYKA
        MP  LPKSLP +  ID+EIKLV G KPPAKNAY MAPPELAEL+KQLDELL A FIRP            +KKDG+L+L ++Y+A
Subjt:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQL-VLYKA

A0A5A7UAP7 Reverse transcriptase domain-containing protein7.5e-1662.2Show/hide
Query:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQLVLY
        MP  LPKSLP Q  ID+EI+LV G KPPAKNAY MAPPELAEL+KQLDELL A FIRP            +KKDG+L+L ++
Subjt:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQLVLY

A0A5A7V9H9 RT_RNaseH_2 domain-containing protein1.8e-22100Show/hide
Query:  LPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRPEK
        LPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRPEK
Subjt:  LPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRPEK

A0A5D3DEJ3 Reverse transcriptase1.3e-1561.18Show/hide
Query:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQLVL-YKA
        MP  LPKSLP +  ID+EI+LV G KPPAKNAY MAPPEL EL+KQLDELL ARFIRP            +KKDG+L+L + Y+A
Subjt:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQLVL-YKA

A0A5D3DJF7 Reverse transcriptase4.4e-1662.35Show/hide
Query:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQL-VLYKA
        MP  LPKSLP +  ID+EIKLV G KPPAKNAY MAPPELAEL+KQLDELL A FIRP            +KKDG+L+L ++Y+A
Subjt:  MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP------------EKKDGTLQL-VLYKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCTAAGCTGCCAAAGTCACTGCCTTCTCAATGGGAGATTGATAATGAGATTAAACTTGTTCTAGGAACCAAACCTCCAGCAAAGAATGCTTACGGAATGGCTCC
ACCTGAGTTAGCTGAGCTCAAGAAACAGTTAGATGAGTTATTGGCTGCTAGATTTATAAGACCTGAGAAAAAAGACGGAACACTCCAATTAGTACTTTACAAAGCTCGAC
CTCCTGCCAGACAATTACCATGTTCAAATAACACAAGGGAACGAACTAAAGACTACTCACGTAACAAGCTTGACAAACGTCCCCATAACCTTTTGCAGCTTAATGAATTA
GATATTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCACCTAAGCTGCCAAAGTCACTGCCTTCTCAATGGGAGATTGATAATGAGATTAAACTTGTTCTAGGAACCAAACCTCCAGCAAAGAATGCTTACGGAATGGCTCC
ACCTGAGTTAGCTGAGCTCAAGAAACAGTTAGATGAGTTATTGGCTGCTAGATTTATAAGACCTGAGAAAAAAGACGGAACACTCCAATTAGTACTTTACAAAGCTCGAC
CTCCTGCCAGACAATTACCATGTTCAAATAACACAAGGGAACGAACTAAAGACTACTCACGTAACAAGCTTGACAAACGTCCCCATAACCTTTTGCAGCTTAATGAATTA
GATATTCCATGA
Protein sequenceShow/hide protein sequence
MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRPEKKDGTLQLVLYKARPPARQLPCSNNTRERTKDYSRNKLDKRPHNLLQLNEL
DIP