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IVF0010368 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010368
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr09:12516288..12516646
RNA-Seq ExpressionIVF0010368
SyntenyIVF0010368
Gene Ontology termsNA
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054796.1 Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var. makuwa]2.53e-2457.78Show/hide
Query:  MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKVIHPIYY
        +DL KIDV+  +  P       R      Y FD+K +QAFQTLKD L    I I PDW QPFELMCD SDV VGA+ GQKK+KVIHPIYY
Subjt:  MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKVIHPIYY

KAA0062384.1 uncharacterized protein E6C27_scaffold154G001600 [Cucumis melo var. makuwa]2.19e-63100Show/hide
Query:  MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKVIHPIYYAGYK
        MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKVIHPIYYAGYK
Subjt:  MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKVIHPIYYAGYK

KAA0062396.1 putative polyprotein [Cucumis melo var. makuwa]1.22e-2466.67Show/hide
Query:  KIDV-IHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILG
        KIDV IH RIFP+RQT++  +    +Y FDEKC+QAFQT+KD LT   ILIT DW QPFELMCDTSDV VG +LG
Subjt:  KIDV-IHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILG

KAA0067087.1 Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var. makuwa]1.48e-2151.81Show/hide
Query:  MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDK
        +D  KIDVIH RIFP+ +     +     Y FD+KC+  FQT+KD LT   ILITPDW QPFELMCD SD+ +G  L +++ K
Subjt:  MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDK

TYK26584.1 putative polyprotein [Cucumis melo var. makuwa]2.44e-2461.73Show/hide
Query:  KIDV-IHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKV
        KIDV IH RIFP+RQT++  +    +Y FDEKC+QAFQT+KD LT   ILIT DW QPFELMCDTSDV VG +LG  +  +
Subjt:  KIDV-IHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKV

TrEMBL top hitse value%identityAlignment
A0A5A7UKH8 Retrovirus-related Pol polyprotein from transposon 412 family5.1e-1857.78Show/hide
Query:  MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKVIHPIYY
        +DL KIDV+  +  P       R      Y FD+K +QAFQTLKD L    I I PDW QPFELMCD SDV VGA+ GQKK+KVIHPIYY
Subjt:  MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKVIHPIYY

A0A5A7V7K1 Putative polyprotein8.7e-1866.67Show/hide
Query:  KIDV-IHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILG
        KIDV IH RIFP+RQT++  +    +Y FDEKC+QAFQT+KD LT   ILIT DW QPFELMCDTSDV VG +LG
Subjt:  KIDV-IHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILG

A0A5D3DSP9 Putative polyprotein3.0e-1861.73Show/hide
Query:  KIDV-IHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKV
        KIDV IH RIFP+RQT++  +    +Y FDEKC+QAFQT+KD LT   ILIT DW QPFELMCDTSDV VG +LG  +  +
Subjt:  KIDV-IHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKV

A0A5D3DSQ6 RT_RNaseH_2 domain-containing protein3.0e-47100Show/hide
Query:  MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKVIHPIYYAGYK
        MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKVIHPIYYAGYK
Subjt:  MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKVIHPIYYAGYK

A0A6P5N2H8 uncharacterized protein LOC1102772259.6e-1749.4Show/hide
Query:  IHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKVIHPIYYA
        IHQR F N + T++ +  + ++IFD++C  AF+TLK  LT   I+  P W  PFELMCD S++ +GA+LGQ+K+K +H IYYA
Subjt:  IHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKVIHPIYYA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTTGTGAAGATTGATGTGATTCATCAAAGGATTTTTCCAAATCGCCAAACCACTGAGAAACGTATTGAGCGTAAATCAACCTACATCTTTGATGAGAAGTGCCA
CCAGGCATTCCAAACATTAAAAGACATGTTGACCCCAACGTCTATCCTCATCACTCCTGATTGGTTGCAACCATTTGAATTGATGTGCGACACAAGTGATGTGACGGTAG
GAGCTATATTAGGTCAAAAGAAGGATAAAGTGATCCACCCGATATACTACGCGGGATACAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCTTGTGAAGATTGATGTGATTCATCAAAGGATTTTTCCAAATCGCCAAACCACTGAGAAACGTATTGAGCGTAAATCAACCTACATCTTTGATGAGAAGTGCCA
CCAGGCATTCCAAACATTAAAAGACATGTTGACCCCAACGTCTATCCTCATCACTCCTGATTGGTTGCAACCATTTGAATTGATGTGCGACACAAGTGATGTGACGGTAG
GAGCTATATTAGGTCAAAAGAAGGATAAAGTGATCCACCCGATATACTACGCGGGATACAAATGA
Protein sequenceShow/hide protein sequence
MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKVIHPIYYAGYK