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IVF0010398 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010398
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr10:24284831..24284998
RNA-Seq ExpressionIVF0010398
SyntenyIVF0010398
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038851.1 retrotransposon protein [Cucumis melo var. makuwa]2.17e-3094.55Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
        MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLA SMFT+WQ RNA
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
KAA0043059.1 retrotransposon protein [Cucumis melo var. makuwa]1.79e-2990.91Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
        MTYCDDV+DEDEGDSTYATTTASEDIQYIETTNEWSQWRD+LA SMFT+WQ RNA
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
KAA0062284.1 retrotransposon protein [Cucumis melo var. makuwa]3.21e-3094.55Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
        MTYCDD++DEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLA SMFTEWQLRNA
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
KAA0065478.1 retrotransposon protein [Cucumis melo var. makuwa]1.88e-29100Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
        MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
TYK04228.1 retrotransposon protein [Cucumis melo var. makuwa]3.61e-2990.91Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
        MTYCD+V+D+DEGDSTYATTTASEDIQYIETTNEWSQWRDDLA SMFTEWQLRN 
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
TrEMBL top hitse value%identityAlignment
A0A5A7TMY2 Retrotransposon protein3.4e-2296.36Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
        MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLA SMFT+WQLRNA
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
A0A5A7UG16 Retrotransposon protein2.6e-2298.18Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
        MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLA SMFTEWQLRNA
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
A0A5A7UZ70 Retrotransposon protein3.4e-2296.36Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
        MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLA SMFT+WQLRNA
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
A0A5A7V4C6 Retrotransposon protein5.8e-2296.36Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
        MTYCDDVED+DEGDSTYATTTASEDIQYIETTNEWSQWRDDLA SMFTEWQLRNA
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
A0A5A7VCW6 Retrotransposon protein3.1e-23100Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
        MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGAGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCA
GTGGCGCGACGACCTAGCCGGATCGATGTTCACCGAATGGCAGTTGCGTAACGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGAGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCA
GTGGCGCGACGACCTAGCCGGATCGATGTTCACCGAATGGCAGTTGCGTAACGCTTAG
Protein sequenceShow/hide protein sequence
MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAGSMFTEWQLRNA