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IVF0010449 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010449
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Genome locationchr06:3782173..3782729
RNA-Seq ExpressionIVF0010449
SyntenyIVF0010449
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039086.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]6.39e-7896.15Show/hide
Query:  MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANPRGAQPQNRRGQQPRYVGGRHGPIIEEENNRNSENDDNSSTESDEF
        MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANPRGAQPQNRRGQQPRYVGGRHGPIIEEENNRNSENDDNSSTESDEF
Subjt:  MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANPRGAQPQNRRGQQPRYVGGRHGPIIEEENNRNSENDDNSSTESDEF

Query:  VEEAILRANWYERERPQQRRGENSEFKIKI
        VEEAILRANWYERERPQQRRGEN+  K+K+
Subjt:  VEEAILRANWYERERPQQRRGENSEFKIKI

KAA0056127.1 uncharacterized protein E6C27_scaffold697G00040 [Cucumis melo var. makuwa]7.81e-5168.84Show/hide
Query:  MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANPRGAQPQNRRGQQPR---------------YVGGRHGPIIEEENNR
        M NRG REKENE   LPALWQA A+IGNRLDEHF++TNRDIQEIQRS+ QMN N RG +PQN   QQP+               Y G RHGP+IEEEN+ 
Subjt:  MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANPRGAQPQNRRGQQPR---------------YVGGRHGPIIEEENNR

Query:  NSENDDNSSTESDEFVEEAILRANWYERERPQQRRGEN
        NSENDDNSSTESDEF +EAILRAN YERERPQQR GEN
Subjt:  NSENDDNSSTESDEFVEEAILRANWYERERPQQRRGEN

XP_020701170.1 uncharacterized protein LOC110113085 [Dendrobium catenatum]6.92e-0830.43Show/hide
Query:  TLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNAN-----PRGAQPQNRRGQQPRYVGGRHGPIIEEENNRNSENDDNSSTESDEFVEEAILRAN
        +L ALW A   +G R +E     +R  +EI+R + ++        P    P  RRG  P  +  R   + E  ++     +  +S   D   EE +    
Subjt:  TLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNAN-----PRGAQPQNRRGQQPRYVGGRHGPIIEEENNRNSENDDNSSTESDEFVEEAILRAN

Query:  WYERERPQQRRGENSEFKIKIDLPYFDGTFEIEEFLDW
         + R RP+     N EF++K+D+PYFDG   IE++LDW
Subjt:  WYERERPQQRRGENSEFKIKIDLPYFDGTFEIEEFLDW

XP_028551405.1 uncharacterized protein LOC114579829 [Dendrobium catenatum]8.36e-0729.59Show/hide
Query:  MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANP----------RGAQPQNRRGQQPRYVGGRHGPIIEEENNRNSEND
        M  RG         TL ALW     +  R+DE      R   +++R    +   P          R  QP  RR    R  G RHG   +E     ++++
Subjt:  MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANP----------RGAQPQNRRGQQPRYVGGRHGPIIEEENNRNSEND

Query:  DN------------SSTESDEFVEEAILRANWYERERPQQRRGENSEFKIKIDLPYFDGTFEIEEFLDW
        D+            S  E D+FV     R       RPQ  R  + EFK+K+D+P+FDG   IE++LDW
Subjt:  DN------------SSTESDEFVEEAILRANWYERERPQQRRGENSEFKIKIDLPYFDGTFEIEEFLDW

XP_040994264.1 uncharacterized protein LOC121240799 [Juglans microcarpa x Juglans regia]1.54e-0835.81Show/hide
Query:  MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANPRGAQPQNRRGQQPRYVGGRHGPIIEEENNRNSENDDNSSTESDEF
        M    + + +NE     ALW++I     +  E FE   R +QEIQRS+   N +  G + QN R    R  GGR     ++++       DNSS+E  E 
Subjt:  MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANPRGAQPQNRRGQQPRYVGGRHGPIIEEENNRNSENDDNSSTESDEF

Query:  VEEAILRANWYERERPQQRRGENSEFKIKIDLPYFDGTFEIEEFLDWL
        +E  +   N       Q+ R  N+ FKIKIDLP F+G   +E FLDWL
Subjt:  VEEAILRANWYERERPQQRRGENSEFKIKIDLPYFDGTFEIEEFLDWL

TrEMBL top hitse value%identityAlignment
A0A2I0WQN8 RNA-directed DNA polymerase2.0e-0529.59Show/hide
Query:  MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANP----------RGAQPQNRRGQQPRYVGGRHGPIIEEENNRNSEND
        M  RG         TL ALW     +  R+DE      R   +++R    +   P          R  QP  RR    R  G RHG   +E     ++++
Subjt:  MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANP----------RGAQPQNRRGQQPRYVGGRHGPIIEEENNRNSEND

Query:  D------------NSSTESDEFVEEAILRANWYERERPQQRRGENSEFKIKIDLPYFDGTFEIEEFLDW
        D            +S  E D+FV     R       RPQ  R  + EFK+K+D+P+FDG   IE++LDW
Subjt:  D------------NSSTESDEFVEEAILRANWYERERPQQRRGENSEFKIKIDLPYFDGTFEIEEFLDW

A0A5A7TAL8 Transposon Ty3-G Gag-Pol polyprotein5.3e-6296.15Show/hide
Query:  MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANPRGAQPQNRRGQQPRYVGGRHGPIIEEENNRNSENDDNSSTESDEF
        MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANPRGAQPQNRRGQQPRYVGGRHGPIIEEENNRNSENDDNSSTESDEF
Subjt:  MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANPRGAQPQNRRGQQPRYVGGRHGPIIEEENNRNSENDDNSSTESDEF

Query:  VEEAILRANWYERERPQQRRGENSEFKIKI
        VEEAILRANWYERERPQQRRGEN+  K+K+
Subjt:  VEEAILRANWYERERPQQRRGENSEFKIKI

A0A5A7UNE4 Uncharacterized protein1.5e-4068.84Show/hide
Query:  MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANPRGAQPQNRRGQQP---------------RYVGGRHGPIIEEENNR
        M NRG REKENE   LPALWQA A+IGNRLDEHF++TNRDIQEIQRS+ QMN N RG +PQN   QQP               +Y G RHGP+IEEEN+ 
Subjt:  MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANPRGAQPQNRRGQQP---------------RYVGGRHGPIIEEENNR

Query:  NSENDDNSSTESDEFVEEAILRANWYERERPQQRRGEN
        NSENDDNSSTESDEF +EAILRAN YERERPQQR GEN
Subjt:  NSENDDNSSTESDEFVEEAILRANWYERERPQQRRGEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAATAGAGGTGATAGAGAGAAAGAGAATGAGGCAGAAACTCTTCCAGCTTTGTGGCAAGCCATAGCTAAAATAGGAAATCGACTCGATGAACATTTCGAGCGAAC
AAATAGGGACATCCAAGAAATCCAGCGAAGCATGGCCCAAATGAACGCCAATCCTAGAGGTGCGCAACCACAAAATCGTCGTGGACAGCAGCCACGATATGTTGGAGGGC
GACATGGACCTATAATAGAAGAAGAAAACAACAGGAACTCAGAAAATGATGATAATAGCAGCACAGAATCAGACGAATTTGTAGAAGAAGCAATTCTTAGAGCAAATTGG
TACGAAAGGGAACGCCCACAACAAAGAAGAGGTGAAAACAGTGAGTTTAAAATAAAAATTGATCTCCCTTATTTTGATGGTACATTTGAAATTGAAGAATTTCTAGATTG
GCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAATAGAGGTGATAGAGAGAAAGAGAATGAGGCAGAAACTCTTCCAGCTTTGTGGCAAGCCATAGCTAAAATAGGAAATCGACTCGATGAACATTTCGAGCGAAC
AAATAGGGACATCCAAGAAATCCAGCGAAGCATGGCCCAAATGAACGCCAATCCTAGAGGTGCGCAACCACAAAATCGTCGTGGACAGCAGCCACGATATGTTGGAGGGC
GACATGGACCTATAATAGAAGAAGAAAACAACAGGAACTCAGAAAATGATGATAATAGCAGCACAGAATCAGACGAATTTGTAGAAGAAGCAATTCTTAGAGCAAATTGG
TACGAAAGGGAACGCCCACAACAAAGAAGAGGTGAAAACAGTGAGTTTAAAATAAAAATTGATCTCCCTTATTTTGATGGTACATTTGAAATTGAAGAATTTCTAGATTG
GCTATAA
Protein sequenceShow/hide protein sequence
MENRGDREKENEAETLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANPRGAQPQNRRGQQPRYVGGRHGPIIEEENNRNSENDDNSSTESDEFVEEAILRANW
YERERPQQRRGENSEFKIKIDLPYFDGTFEIEEFLDWL