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IVF0010490 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010490
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr11:14033859..14034197
RNA-Seq ExpressionIVF0010490
SyntenyIVF0010490
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037455.1 hypothetical protein E6C27_scaffold277G00430 [Cucumis melo var. makuwa]1.34e-1776.92Show/hide
Query:  MDANNNNMTKLEEVNHNKASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLV
        M A+NNNMT   E NH KASQMKDS++R LPQVDSSNNNLTI RSK TST+ DQDEDKAFKLKL 
Subjt:  MDANNNNMTKLEEVNHNKASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLV

KAA0056838.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.78e-1353.03Show/hide
Query:  SKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLVSSHGPLGEMG
        SK   T  + + D+AFK KLV WLK+NELKLS KY ++ PSSS+ P+++ DQN+ ++ HGPLG+ G
Subjt:  SKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLVSSHGPLGEMG

TYK01064.1 hypothetical protein E5676_scaffold264G00780 [Cucumis melo var. makuwa]8.53e-66100Show/hide
Query:  MDANNNNMTKLEEVNHNKASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLV
        MDANNNNMTKLEEVNHNKASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLV
Subjt:  MDANNNNMTKLEEVNHNKASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLV

Query:  SSHGPLGEMGNT
        SSHGPLGEMGNT
Subjt:  SSHGPLGEMGNT

TYK04225.1 hypothetical protein E5676_scaffold24967G00330 [Cucumis melo var. makuwa]3.13e-1658.11Show/hide
Query:  NLTIERSKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLVSSHGPLGEMGNT
        N T    K TS   +Q+ D+AFK KLVNWLK+NELKLS KY S+  SSS  P+++ DQN+ +SSHGPLG+ GNT
Subjt:  NLTIERSKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLVSSHGPLGEMGNT

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.78e-1253.03Show/hide
Query:  SKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLVSSHGPLGEMG
        SK   T  + + D+AFK KLV WLK+NELKLS KY ++ PSSS  P+++ DQN+ ++ HGPLG+ G
Subjt:  SKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLVSSHGPLGEMG

TrEMBL top hitse value%identityAlignment
A0A5A7T7L9 Uncharacterized protein2.4e-1461.63Show/hide
Query:  MDANNNNMTKLEEVNHNKASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLV-----NWLKDNELKLSSKYAS
        M A+NNNMT   E NH KASQMKDS++R LPQVDSSNNNLTI RSK TST+ DQDEDKAFKLKL       W+    +   SK ++
Subjt:  MDANNNNMTKLEEVNHNKASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLV-----NWLKDNELKLSSKYAS

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein3.0e-0943.01Show/hide
Query:  KASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLVSSHGPLGEMG
        +A  +  S K    Q  S++ +     SK   T  + + D+AFK KLV WLK+NELKLS KY ++ PSSS  P+++ DQN+ ++ HGPLG+ G
Subjt:  KASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLVSSHGPLGEMG

A0A5D3BKT8 LINE-1 retrotransposable element ORF2 protein7.9e-1043.01Show/hide
Query:  KASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLVSSHGPLGEMG
        +A  +  S K    Q  S++ +     SK   T  + + D+AFK KLV WLK+NELKLS KY ++ PSSS+ P+++ DQN+ ++ HGPLG+ G
Subjt:  KASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLVSSHGPLGEMG

A0A5D3BPD1 Uncharacterized protein1.7e-52100Show/hide
Query:  MDANNNNMTKLEEVNHNKASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLV
        MDANNNNMTKLEEVNHNKASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLV
Subjt:  MDANNNNMTKLEEVNHNKASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLV

Query:  SSHGPLGEMGNT
        SSHGPLGEMGNT
Subjt:  SSHGPLGEMGNT

A0A5D3BYJ0 Uncharacterized protein1.5e-1347.71Show/hide
Query:  NNNNMTKLEEVNHNKASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLVSSH
        NN   T  E  N N+ + +K+  + I  Q    + N T    K TS   +Q+ D+AFK KLVNWLK+NELKLS KY S+  SSS  P+++ DQN+ +SSH
Subjt:  NNNNMTKLEEVNHNKASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLVSSH

Query:  GPLGEMGNT
        GPLG+ GNT
Subjt:  GPLGEMGNT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCAAACAACAATAACATGACAAAACTGGAGGAGGTGAATCACAATAAGGCCAGTCAAATGAAAGATAGTAGAAAAAGAATACTCCCACAAGTTGACAGCTCTAA
CAATAATCTCACTATTGAAAGATCAAAAACCACAAGCACAAACTATGATCAAGATGAAGACAAGGCTTTCAAGTTGAAATTGGTGAACTGGTTAAAAGATAACGAGCTCA
AATTGTCTTCAAAGTATGCCTCAGAAGCTCCTAGTTCATCTACAAATCCTCTACTGTTAATTGATCAAAATTTGCTTGTATCAAGCCATGGGCCTTTGGGGGAAATGGGT
AACACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCAAACAACAATAACATGACAAAACTGGAGGAGGTGAATCACAATAAGGCCAGTCAAATGAAAGATAGTAGAAAAAGAATACTCCCACAAGTTGACAGCTCTAA
CAATAATCTCACTATTGAAAGATCAAAAACCACAAGCACAAACTATGATCAAGATGAAGACAAGGCTTTCAAGTTGAAATTGGTGAACTGGTTAAAAGATAACGAGCTCA
AATTGTCTTCAAAGTATGCCTCAGAAGCTCCTAGTTCATCTACAAATCCTCTACTGTTAATTGATCAAAATTTGCTTGTATCAAGCCATGGGCCTTTGGGGGAAATGGGT
AACACATGA
Protein sequenceShow/hide protein sequence
MDANNNNMTKLEEVNHNKASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAFKLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLVSSHGPLGEMG
NT