; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0010502 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010502
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionprotein RADIALIS-like 3
Genome locationchr01:16476856..16479119
RNA-Seq ExpressionIVF0010502
SyntenyIVF0010502
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055424.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa]1.23e-5796.77Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYL
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRL+K +
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYL

XP_004151090.1 protein RADIALIS-like 3 [Cucumis sativus]1.65e-5996.88Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEILLEDLR+IESGRVPIPNYR TSNRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

XP_008447023.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]2.44e-6198.96Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

XP_023554816.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]2.98e-5388.54Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSA+EV+RHYEILLEDLR+IESGRVPIPNYRG  N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

XP_038888995.1 protein RADIALIS-like 3 isoform X1 [Benincasa hispida]3.62e-5488.54Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERW NIA AVGGKS +EV+RHYE+LLEDLR+IESGRVPIPNYRG  NRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

TrEMBL top hitse value%identityAlignment
A0A0A0K2A2 SANT domain-containing protein1.1e-4496.88Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEILLEDLR+IESGRVPIPNYR TSNRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

A0A1S3BHB0 protein RADIALIS-like 34.5e-4698.96Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

A0A5D3DF44 Protein RADIALIS-like 32.1e-4396.77Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYL
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRL+K +
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYL

A0A6J1GKW1 protein RADIALIS-like 34.1e-3987.5Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSA+EV+RHYEILLEDL +IESGRVPIPNYRG  N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

A0A6J1ICR6 protein RADIALIS-like 39.1e-3986.46Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+ PERW NIA AVGGKSA+EV+RHYEILLEDL++IESGRVPIPNYRG  N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 15.2e-2353.47Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYR---GTSN--RDEELRLLKYLKL
        MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ EEV+RHYE+L++D+  IE+G VP PNYR   G +N    +E + ++ ++L
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYR---GTSN--RDEELRLLKYLKL

Query:  Q
        Q
Subjt:  Q

Q1A173 Protein RADIALIS-like 61.8e-2356Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYR-----GTSNRDEELRLLKYLKL
        MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ EEV+RHY+IL+EDL  IE+GRVP+PNY+       S  D + R +K LK+
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYR-----GTSNRDEELRLLKYLKL

Q58FS3 Transcription factor RADIALIS2.2e-2155.42Show/hide
Query:  WTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGT-SNRDEELRLLKYLKLQ
        W+ K+NK FE+ALA+YDKDTP+RW N+A AV G++ EEV++HYEIL+ED++ IESG+VP PNYR T  N   + +  + LK++
Subjt:  WTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGT-SNRDEELRLLKYLKLQ

Q6NNN0 Protein RADIALIS-like 31.0e-2362.2Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSN
        MAS+S+       +WT K+NKLFE+ALA YD+DTP+RW N+A AVGGKSAEEV+RHYE+L+ D+  IESGR P PNYR   N
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSN

Q8GW75 Protein RADIALIS-like 57.2e-2556.31Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYR----GTSNR---DEELRLLKYL
        MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSAEEV+RHY+IL+EDL  IE   VP+P Y+    G+ +R   D +LRL+K +
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYR----GTSNR---DEELRLLKYL

Query:  KLQ
        ++Q
Subjt:  KLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 55.1e-2656.31Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYR----GTSNR---DEELRLLKYL
        MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSAEEV+RHY+IL+EDL  IE   VP+P Y+    G+ +R   D +LRL+K +
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYR----GTSNR---DEELRLLKYL

Query:  KLQ
        ++Q
Subjt:  KLQ

AT1G75250.1 RAD-like 68.2e-2464.1Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ EEV+RHY+IL+EDL  IE+GRVP+PNY+
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYR

AT1G75250.2 RAD-like 61.3e-2456Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYR-----GTSNRDEELRLLKYLKL
        MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ EEV+RHY+IL+EDL  IE+GRVP+PNY+       S  D + R +K LK+
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYR-----GTSNRDEELRLLKYLKL

AT2G18328.1 RAD-like 43.4e-2260.49Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTS
        MASSS+      ++WT +++K FE ALA +DKDTP+RWQ IA AVGGKS EEV+RHYE+LL D+  IESGR P P YR T+
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTS

AT4G39250.1 RAD-like 13.7e-2453.47Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYR---GTSN--RDEELRLLKYLKL
        MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ EEV+RHYE+L++D+  IE+G VP PNYR   G +N    +E + ++ ++L
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYR---GTSN--RDEELRLLKYLKL

Query:  Q
        Q
Subjt:  Q


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGAGCTCTTTGAAGCAGCAACGACCGGAGACGACGTGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACGCCTGAGAG
ATGGCAAAATATTGCCACCGCGGTCGGTGGGAAGTCGGCCGAAGAAGTTCAAAGACACTATGAGATACTCTTGGAAGATCTCCGGCAGATCGAGTCCGGTCGTGTTCCTA
TTCCCAATTACCGAGGCACTAGCAATCGAGATGAAGAGTTGAGGCTGTTAAAGTATCTGAAGCTTCAATGA
mRNA sequenceShow/hide mRNA sequence
CTCCTCTCTCTTTCTTCTTTCGCCGACACACATATTCTTCCAACTTGCTTCCTATATTTCATATATAGATCTCTCTCATTTCTTCTTTACATCTCCCAAAAAAAAAAATC
CCTTTTTATCCAATGGCTTCGAGCTCTTTGAAGCAGCAACGACCGGAGACGACGTGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGA
TACGCCTGAGAGATGGCAAAATATTGCCACCGCGGTCGGTGGGAAGTCGGCCGAAGAAGTTCAAAGACACTATGAGATACTCTTGGAAGATCTCCGGCAGATCGAGTCCG
GTCGTGTTCCTATTCCCAATTACCGAGGCACTAGCAATCGAGATGAAGAGTTGAGGCTGTTAAAGTATCTGAAGCTTCAATGAAGAACTTGCCTACCACTACCACTATTC
TCTTTCAATCTCTCATCAAACACAAGTGGCTCACTTGGCCTAGGTGTATTCATAGATATTCTAATGTACAAGTTTTATATCTTTTAAATCAACTTTCTCTCAATAAAAAG
TGTACAACCAACAATCTATTTTAATATAATTTCATTTGCAT
Protein sequenceShow/hide protein sequence
MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ