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IVF0010504 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010504
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr07:8671513..8671989
RNA-Seq ExpressionIVF0010504
SyntenyIVF0010504
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035960.1 uncharacterized protein E6C27_scaffold56G001640 [Cucumis melo var. makuwa]1.62e-4778.3Show/hide
Query:  MSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTSNGNASTSTSCTMVGTYSIEVPKINMFSG
        MSG M+ELIQDN+EIS   KEMIK LG S+GKEMYDLLVEVTNLRKFV+EELH LRK+VDEVRAEC SRH SNGNASTSTSCT+VGT++I+VPK +M++G
Subjt:  MSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTSNGNASTSTSCTMVGTYSIEVPKINMFSG

Query:  TRNAMM
        TRNA M
Subjt:  TRNAMM

KAA0035961.1 uncharacterized protein E6C27_scaffold56G001660 [Cucumis melo var. makuwa]2.13e-4476.42Show/hide
Query:  MSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTSNGNASTSTSCTMVGTYSIEVPKINMFSG
        MSG M+ELIQDN+EIS   KEMIK LG S+GKEMYD+LVEVTNLRKFV+EELH LRK+VDEVRAE  SRH SNGNASTSTSCTMVGT++I+VPK + ++G
Subjt:  MSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTSNGNASTSTSCTMVGTYSIEVPKINMFSG

Query:  TRNAMM
        TRNA M
Subjt:  TRNAMM

KAA0059692.1 uncharacterized protein E6C27_scaffold54G001490 [Cucumis melo var. makuwa]4.36e-3475.29Show/hide
Query:  MIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTSNGNASTSTSCTMVGTYSIEVPKINMFSGTRNAMM
        MIK  G S+ KEMYDLLVEVT+LRKFV+EELHVL KDVDEVRAECQSRH SNGNASTSTS  +VGT+ I+VPK +M++ TRNA M
Subjt:  MIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTSNGNASTSTSCTMVGTYSIEVPKINMFSGTRNAMM

KAA0064169.1 uncharacterized protein E6C27_scaffold548G00940 [Cucumis melo var. makuwa]1.04e-5897.12Show/hide
Query:  MCSTTFPIPEDDDNTEKAKELLAKLEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEV
        MCSTTFPIPEDDDNTEKAKELLAKLEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDE 
Subjt:  MCSTTFPIPEDDDNTEKAKELLAKLEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEV

Query:  RAEC
          EC
Subjt:  RAEC

KAE8637433.1 hypothetical protein CSA_004611, partial [Cucumis sativus]4.24e-2762.37Show/hide
Query:  KELLAKLEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTSN
        +E  A LE  LEEVQ K+G+ S  MEEL+ D+ E+SK+TK MI+ L  S+GK+++DL+VEVTN+RKF++EELH LRKDVDEVRAEC SRH +N
Subjt:  KELLAKLEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTSN

TrEMBL top hitse value%identityAlignment
A0A5A7SY30 Retrotrans_gag domain-containing protein5.7e-3878.3Show/hide
Query:  MSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTSNGNASTSTSCTMVGTYSIEVPKINMFSG
        MSG M+ELIQDN+EIS   KEMIK LG S+GKEMYDLLVEVTNLRKFV+EELH LRK+VDEVRAEC SRH SNGNASTSTSCT+VGT++I+VPK +M++G
Subjt:  MSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTSNGNASTSTSCTMVGTYSIEVPKINMFSG

Query:  TRNAMM
        TRNA M
Subjt:  TRNAMM

A0A5A7T2W8 Retrotrans_gag domain-containing protein5.3e-3676.42Show/hide
Query:  MSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTSNGNASTSTSCTMVGTYSIEVPKINMFSG
        MSG M+ELIQDN+EIS   KEMIK LG S+GKEMYD+LVEVTNLRKFV+EELH LRK+VDEVRAE  SRH SNGNASTSTSCTMVGT++I+VPK + ++G
Subjt:  MSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTSNGNASTSTSCTMVGTYSIEVPKINMFSG

Query:  TRNAMM
        TRNA M
Subjt:  TRNAMM

A0A5A7THC0 Reverse transcriptase domain-containing protein1.1e-1742.97Show/hide
Query:  LAKLEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKD-------VDEVRAECQSRHTSNGNA
        L  LE+G+E+VQ  VG++S   EEL+Q+N EI+ V KEMI+ +G ++ KE+ +L   VT L+ FV+ ELH L          +D +  EC+S+H  +   
Subjt:  LAKLEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKD-------VDEVRAECQSRHTSNGNA

Query:  STSTSCTMVGTYSIEVPKINMFSGTRNA
        STST  T  GT +I+VPK ++++G RNA
Subjt:  STSTSCTMVGTYSIEVPKINMFSGTRNA

A0A5D3BUR0 Retrotrans_gag domain-containing protein3.0e-4797.12Show/hide
Query:  MCSTTFPIPEDDDNTEKAKELLAKLEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEV
        MCSTTFPIPEDDDNTEKAKELLAKLEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDE 
Subjt:  MCSTTFPIPEDDDNTEKAKELLAKLEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEV

Query:  RAEC
          EC
Subjt:  RAEC

A0A5D3DRU7 Uncharacterized protein2.5e-2575.29Show/hide
Query:  MIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTSNGNASTSTSCTMVGTYSIEVPKINMFSGTRNAMM
        MIK  G S+ KEMYDLLVEVT+LRKFV+EELHVL KDVDEVRAECQSRH SNGNASTSTS  +VGT+ I+VPK +M++ TRNA M
Subjt:  MIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTSNGNASTSTSCTMVGTYSIEVPKINMFSGTRNAMM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAGCACGACGTTCCCCATCCCGGAAGACGACGACAACACGGAGAAGGCTAAAGAGCTTCTTGCTAAGTTAGAGGAGGGATTGGAGGAGGTGCAGACTAAAGTCGG
CAAGATGAGCGGGTTCATGGAAGAGCTAATCCAAGATAACATGGAGATCTCGAAAGTCACCAAGGAAATGATCAAAGGCCTTGGAGGCTCGTACGGTAAGGAGATGTATG
ATCTTCTTGTTGAGGTAACTAACTTGCGAAAGTTCGTGAAAGAGGAACTTCACGTCTTACGAAAGGACGTCGATGAGGTACGTGCCGAATGTCAATCTAGACATACTAGT
AACGGTAATGCATCCACTAGTACATCATGCACCATGGTAGGCACCTACAGTATCGAAGTGCCAAAAATCAACATGTTTAGTGGCACGAGGAATGCCATGATGTGGAGAAT
TTCCTATTTGGCCTTGAGCAGTATTATGAGGCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTAGCACGACGTTCCCCATCCCGGAAGACGACGACAACACGGAGAAGGCTAAAGAGCTTCTTGCTAAGTTAGAGGAGGGATTGGAGGAGGTGCAGACTAAAGTCGG
CAAGATGAGCGGGTTCATGGAAGAGCTAATCCAAGATAACATGGAGATCTCGAAAGTCACCAAGGAAATGATCAAAGGCCTTGGAGGCTCGTACGGTAAGGAGATGTATG
ATCTTCTTGTTGAGGTAACTAACTTGCGAAAGTTCGTGAAAGAGGAACTTCACGTCTTACGAAAGGACGTCGATGAGGTACGTGCCGAATGTCAATCTAGACATACTAGT
AACGGTAATGCATCCACTAGTACATCATGCACCATGGTAGGCACCTACAGTATCGAAGTGCCAAAAATCAACATGTTTAGTGGCACGAGGAATGCCATGATGTGGAGAAT
TTCCTATTTGGCCTTGAGCAGTATTATGAGGCCTTAG
Protein sequenceShow/hide protein sequence
MCSTTFPIPEDDDNTEKAKELLAKLEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTS
NGNASTSTSCTMVGTYSIEVPKINMFSGTRNAMMWRISYLALSSIMRP