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IVF0010513 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010513
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr05:6972585..6974873
RNA-Seq ExpressionIVF0010513
SyntenyIVF0010513
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038979.1 uncharacterized protein E6C27_scaffold84G00600 [Cucumis melo var. makuwa]3.49e-6465.38Show/hide
Query:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTVL---------------------
        M+GSASTNFSDVI IGERIEFGVKN RI+D +SE RRMM+PKKKEEEIHELSSTQRVVHVSSPTVGQTN S SYQN  L                     
Subjt:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTVL---------------------

Query:  --------------------SWGNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDL
                            S  NCFPLKAKVQSLVKAGWLKFKKT E+S+VN NPL NHEGPAIN+VDTFTERYK KVCD+
Subjt:  --------------------SWGNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDL

KAA0063019.1 uncharacterized protein E6C27_scaffold468G001210 [Cucumis melo var. makuwa]2.53e-6167.25Show/hide
Query:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTVL---------------------
        M+GSASTNFSDVI +GE+IEFGVKN RI+D +SE RRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTN S SYQN V                      
Subjt:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTVL---------------------

Query:  ---------SWGNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDL
                 S  NCFPLKAKVQSLVKAGWLKFKKT E+S+VN NP   HEGPAIN+VDTFT+RYK KVCD+
Subjt:  ---------SWGNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDL

TYK16525.1 uncharacterized protein E5676_scaffold21G003390 [Cucumis melo var. makuwa]3.70e-6760.73Show/hide
Query:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCS--------PSYQNTV----------LSW-
        M+GSASTNFS+VI IGERIEFGVKN RITD SSETRRMMT  KKEEEIHELSSTQRVVHVSSPT+ QTN S         S+Q  +          L W 
Subjt:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCS--------PSYQNTV----------LSW-

Query:  -----------------GNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDLDICHQGLTMM-------------
                          NCFPLKAKVQSLVKAGWLKFKK GEDSN+N NPL NHEGP INVVDTFTERYK K+CD+      L  +             
Subjt:  -----------------GNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDLDICHQGLTMM-------------

Query:  -RGRSLDASTRSSVYSTPR
         RGRSLDA TRSSVYST R
Subjt:  -RGRSLDASTRSSVYSTPR

TYK28914.1 Gag-pro-like protein [Cucumis melo var. makuwa]6.61e-7771.74Show/hide
Query:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTV-LSWGNCFPLKAKVQSLVKAGW
        M+GSASTNFSDVI IGERIEFGVKN RITD SSETRRMMTPKKKEEEIHELSSTQRVVHV SP VGQTN SPSYQN V  S  NCFPL+AKVQSLVKA W
Subjt:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTV-LSWGNCFPLKAKVQSLVKAGW

Query:  LKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDLDICHQGLTMM--------------RGRSLDASTRSSVYSTPR
        LKFKKTGE+ +VN NPL N+EGP INVVDTF ERYK +VCD+      L  +               GRSLD  TRSSVYST R
Subjt:  LKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDLDICHQGLTMM--------------RGRSLDASTRSSVYSTPR

XP_016903339.1 PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo]6.89e-5761.54Show/hide
Query:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTVL---------------------
        M+GSASTNFSDVI IGE IEFGVKN RI D SSE RRMMTPKKKEEEIHELSST++VVHVSSPTVGQ N S +YQN                        
Subjt:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTVL---------------------

Query:  --------------------SWGNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDL
                            S  NCFPLKAKVQSLVKAGWLKFKKT E+ +VN NPL NHEGPAIN+VD FT+RYK KVCD+
Subjt:  --------------------SWGNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDL

TrEMBL top hitse value%identityAlignment
A0A5A7T401 Retrotrans_gag domain-containing protein8.5e-4861.54Show/hide
Query:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTVL---------------------
        M+GSASTNFSDVI IGE IEFGVKN RI D SSE RRMMTPKKKEEEIHELSST++VVHVSSPTVGQ N S +YQN                        
Subjt:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTVL---------------------

Query:  --------------------SWGNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDL
                            S  NCFPLKAKVQSLVKAGWLKFKKT E+ +VN NPL NHEGPAIN+VD FT+RYK KVCD+
Subjt:  --------------------SWGNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDL

A0A5A7TCG9 Uncharacterized protein2.5e-5265.38Show/hide
Query:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTVL---------------------
        M+GSASTNFSDVI IGERIEFGVKN RI+D +SE RRMM+PKKKEEEIHELSSTQRVVHVSSPTVGQTN S SYQN  L                     
Subjt:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTVL---------------------

Query:  --------------------SWGNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDL
                            S  NCFPLKAKVQSLVKAGWLKFKKT E+S+VN NPL NHEGPAIN+VDTFTERYK KVCD+
Subjt:  --------------------SWGNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDL

A0A5A7VBN6 Retrotrans_gag domain-containing protein9.7e-5267.25Show/hide
Query:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTVL---------------------
        M+GSASTNFSDVI +GE+IEFGVKN RI+D +SE RRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTN S SYQN V                      
Subjt:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTVL---------------------

Query:  ---------SWGNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDL
                 S  NCFPLKAKVQSLVKAGWLKFKKT E+S+VN NP   HEGPAIN+VDTFT+RYK KVCD+
Subjt:  ---------SWGNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDL

A0A5D3CYF0 Retrotrans_gag domain-containing protein4.2e-5560.27Show/hide
Query:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCS--------PSYQNTVL-------------
        M+GSASTNFS+VI IGERIEFGVKN RITD SSETRRMMT  KKEEEIHELSSTQRVVHVSSPT+ QTN S         S+Q  ++             
Subjt:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCS--------PSYQNTVL-------------

Query:  ---------------SWGNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDLDICHQGLTMM-------------
                       S  NCFPLKAKVQSLVKAGWLKFKK GEDSN+N NPL NHEGP INVVDTFTERYK K+CD+      L  +             
Subjt:  ---------------SWGNCFPLKAKVQSLVKAGWLKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDLDICHQGLTMM-------------

Query:  -RGRSLDASTRSSVYSTPR
         RGRSLDA TRSSVYST R
Subjt:  -RGRSLDASTRSSVYSTPR

A0A5D3DZH7 Gag-pro-like protein9.6e-6071.74Show/hide
Query:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTV-LSWGNCFPLKAKVQSLVKAGW
        M+GSASTNFSDVI IGERIEFGVKN RITD SSETRRMMTPKKKEEEIHELSSTQRVVHV SP VGQTN SPSYQN V  S  NCFPL+AKVQSLVKA W
Subjt:  MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTV-LSWGNCFPLKAKVQSLVKAGW

Query:  LKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDLDICHQGLTMM--------------RGRSLDASTRSSVYSTPR
        LKFKKTGE+ +VN NPL N+EGP INVVDTF ERYK +VCD+      L  +               GRSLD  TRSSVYST R
Subjt:  LKFKKTGEDSNVNLNPLSNHEGPAINVVDTFTERYKKKVCDLDICHQGLTMM--------------RGRSLDASTRSSVYSTPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGAAGTGCTTCGACTAATTTCTCGGACGTCATAATAATTGGGGAGAGGATTGAATTTGGAGTGAAGAATAGAAGGATTACCGATTTTTCGTCAGAGACAAGAAG
GATGATGACTCCAAAGAAAAAAGAGGAAGAAATACATGAGTTGAGCTCGACTCAAAGAGTAGTGCATGTATCCTCACCAACTGTGGGGCAGACAAATTGTTCCCCTAGTT
ATCAGAATACAGTCTTAAGTTGGGGTAACTGTTTTCCTTTGAAAGCTAAAGTGCAAAGTCTAGTCAAGGCAGGATGGTTGAAATTCAAGAAGACAGGAGAAGATTCTAAC
GTTAACTTGAACCCTTTATCAAATCATGAGGGTCCCGCCATAAATGTTGTTGACACATTTACAGAAAGATACAAGAAGAAGGTGTGTGATCTTGATATTTGTCACCAAGG
TTTAACAATGATGAGGGGAAGAAGTTTGGATGCATCAACGAGAAGCAGTGTTTATTCCACCCCGAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGATTGGAAGTGCTTCGACTAATTTCTCGGACGTCATAATAATTGGGGAGAGGATTGAATTTGGAGTGAAGAATAGAAGGATTACCGATTTTTCGTCAGAGACAAGAAG
GATGATGACTCCAAAGAAAAAAGAGGAAGAAATACATGAGTTGAGCTCGACTCAAAGAGTAGTGCATGTATCCTCACCAACTGTGGGGCAGACAAATTGTTCCCCTAGTT
ATCAGAATACAGTCTTAAGTTGGGGTAACTGTTTTCCTTTGAAAGCTAAAGTGCAAAGTCTAGTCAAGGCAGGATGGTTGAAATTCAAGAAGACAGGAGAAGATTCTAAC
GTTAACTTGAACCCTTTATCAAATCATGAGGGTCCCGCCATAAATGTTGTTGACACATTTACAGAAAGATACAAGAAGAAGGTGTGTGATCTTGATATTTGTCACCAAGG
TTTAACAATGATGAGGGGAAGAAGTTTGGATGCATCAACGAGAAGCAGTGTTTATTCCACCCCGAGATAG
Protein sequenceShow/hide protein sequence
MIGSASTNFSDVIIIGERIEFGVKNRRITDFSSETRRMMTPKKKEEEIHELSSTQRVVHVSSPTVGQTNCSPSYQNTVLSWGNCFPLKAKVQSLVKAGWLKFKKTGEDSN
VNLNPLSNHEGPAINVVDTFTERYKKKVCDLDICHQGLTMMRGRSLDASTRSSVYSTPR