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IVF0010539 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010539
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr07:17634096..17634362
RNA-Seq ExpressionIVF0010539
SyntenyIVF0010539
Gene Ontology termsGO:0090481 - pyrimidine nucleotide-sugar transmembrane transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0015165 - pyrimidine nucleotide-sugar transmembrane transporter activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037133.1 retrotransposon protein [Cucumis melo var. makuwa]5.93e-1883.67Show/hide
Query:  AMLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM
        A +WVSSPWVS  +KKGRGDEKNGVKVGVF+MRRS FVRGGILKKERG+
Subjt:  AMLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM

KAA0044825.1 transcription factor bHLH36-like [Cucumis melo var. makuwa]4.82e-1755.68Show/hide
Query:  MSLRTLLPLEFIKVICEIVHREIDKLREKKRKIKIKNSQAMLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM
        MSLRTLLPLEFIKV                                   SVAKKKGRGDEKNGVKVGVFVM RSSFVRGG+LKK+RG+
Subjt:  MSLRTLLPLEFIKVICEIVHREIDKLREKKRKIKIKNSQAMLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM

KAA0048509.1 CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa]8.88e-1273.47Show/hide
Query:  REKKRKIKIKNSQAMLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSS
        R +KRKIK  NS   +WVSSPWVSVA+KKGRGDEKNGVKV VFV+  SS
Subjt:  REKKRKIKIKNSQAMLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSS

KAA0054034.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.04e-1989.58Show/hide
Query:  MLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM
        MLWVSSPWVSV KKKGRGDEKNG KVGVFVMRRSSFVR GILKKE G+
Subjt:  MLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM

TYJ96889.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.11e-1989.58Show/hide
Query:  MLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM
        MLWVSSPWVSV KKKGRGDEKNG KVGVFVMRRSSFVR GILKKE G+
Subjt:  MLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM

TrEMBL top hitse value%identityAlignment
A0A5A7T2E4 Retrotransposon protein1.1e-1483.67Show/hide
Query:  AMLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM
        A +WVSSPWVS  +KKGRGDEKNGVKVGVF+MRRS FVRGGILKKERG+
Subjt:  AMLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM

A0A5A7TTV0 Transcription factor bHLH36-like3.9e-1255.68Show/hide
Query:  MSLRTLLPLEFIKVICEIVHREIDKLREKKRKIKIKNSQAMLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM
        MSLRTLLPLEFIK                                   VSVAKKKGRGDEKNGVKVGVFVM RSSFVRGG+LKK+RG+
Subjt:  MSLRTLLPLEFIKVICEIVHREIDKLREKKRKIKIKNSQAMLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM

A0A5A7U4Z1 CMP-sialic acid transporter 4 isoform X26.9e-0972.34Show/hide
Query:  KKRKIKIKNSQAMLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSS
        +  K KIKNS   +WVSSPWVSVA+KKGRGDEKNGVKV VFV+  SS
Subjt:  KKRKIKIKNSQAMLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSS

A0A5A7UFR0 Ty3-gypsy retrotransposon protein6.4e-1589.58Show/hide
Query:  MLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM
        MLWVSSPWVSV KKKGRGDEKNG KVGVFVMRRSSFVR GILKKE G+
Subjt:  MLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM

A0A5D3BCV7 Ty3-gypsy retrotransposon protein6.4e-1589.58Show/hide
Query:  MLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM
        MLWVSSPWVSV KKKGRGDEKNG KVGVFVMRRSSFVR GILKKE G+
Subjt:  MLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGAGATTGTGCACAGGGAAATAGATAAATTGAGGGAGAAGAAACGAAAAATAAAGATCAAGAA
CTCACAAGCGATGCTATGGGTCTCCTCGCCGTGGGTCTCTGTCGCTAAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCGTCATGCGTCGTT
CGTCGTTCGTGAGGGGAGGAATTTTGAAGAAGGAAAGGGGAATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGAGATTGTGCACAGGGAAATAGATAAATTGAGGGAGAAGAAACGAAAAATAAAGATCAAGAA
CTCACAAGCGATGCTATGGGTCTCCTCGCCGTGGGTCTCTGTCGCTAAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCGTCATGCGTCGTT
CGTCGTTCGTGAGGGGAGGAATTTTGAAGAAGGAAAGGGGAATGTAG
Protein sequenceShow/hide protein sequence
MSLRTLLPLEFIKVICEIVHREIDKLREKKRKIKIKNSQAMLWVSSPWVSVAKKKGRGDEKNGVKVGVFVMRRSSFVRGGILKKERGM