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IVF0010546 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010546
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPol polyprotein
Genome locationchr02:17573773..17574057
RNA-Seq ExpressionIVF0010546
SyntenyIVF0010546
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033219.1 Pol polyprotein [Cucumis melo var. makuwa]1.42e-5392.47Show/hide
Query:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI
        MSVTYRDWHEMLPFALHGYRISVRTSTG+TP SLVYGFEAVLPVEVEV SLRVIQE+ELDEAKWAQVRY+QLNFIEER LTALC+GQLYQKKI
Subjt:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI

KAA0046610.1 Pol polyprotein [Cucumis melo var. makuwa]1.06e-5191.01Show/hide
Query:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLY
        MSVTYRDWHEMLPFALHGYRISVRTSTG+TP SLVYGFEAVLPVEVEV SLRVIQE++LDEAKWAQVRY+QLNFIEER LTALC+GQLY
Subjt:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLY

KAA0060778.1 Pol polyprotein [Cucumis melo var. makuwa]4.11e-5998.92Show/hide
Query:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI
        MSVTYRDWHEMLPFALHGYRISVRTSTG+TPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI
Subjt:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI

KAA0065292.1 RNA-directed DNA polymerase [Cucumis melo var. makuwa]2.86e-5091.4Show/hide
Query:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI
        MSVTYRDWHEMLPFAL+GYRISVRTSTG+TP SLVYGFEAVLPVEVEV SLRVIQE+ELDEAKWAQVRY+QLNFIEER LTALC+GQLYQKKI
Subjt:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI

TYK15866.1 Pol polyprotein [Cucumis melo var. makuwa]3.36e-4884.95Show/hide
Query:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI
        M V YRDWHEMLPFAL+GYRISVRTSTGAT  SLVYGFE +LP+EVEV SL VIQEVELDE KWAQVRY+QLNFIEER LTALC+GQLYQKKI
Subjt:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI

TrEMBL top hitse value%identityAlignment
A0A5A7SVL0 Pol polyprotein9.5e-4192.47Show/hide
Query:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI
        MSVTYRDWHEMLPFALHGYRISVRTSTG+TP SLVYGFEAVLPVEVEV SLRVIQE+ELDEAKWAQVRY+QLNFIEER LTALC+GQLYQKKI
Subjt:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI

A0A5A7TU03 Pol polyprotein4.4e-3891.01Show/hide
Query:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLY
        MSVTYRDWHEMLPFALHGYRISVRTSTG+TP SLVYGFEAVLPVEVEV SLRVIQE++LDEAKWAQVRY+QLNFIEER LTALC+GQLY
Subjt:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLY

A0A5A7UZT9 Pol polyprotein9.2e-4498.92Show/hide
Query:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI
        MSVTYRDWHEMLPFALHGYRISVRTSTG+TPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI
Subjt:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI

A0A5A7VAF2 RNA-directed DNA polymerase6.2e-4091.4Show/hide
Query:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI
        MSVTYRDWHEMLPFAL+GYRISVRTSTG+TP SLVYGFEAVLPVEVEV SLRVIQE+ELDEAKWAQVRY+QLNFIEER LTALC+GQLYQKKI
Subjt:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI

A0A5D3CZI6 Pol polyprotein2.4e-3684.95Show/hide
Query:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI
        M V YRDWHEMLPFAL+GYRISVRTSTGAT  SLVYGFE +LP+EVEV SL VIQEVELDE KWAQVRY+QLNFIEER LTALC+GQLYQKKI
Subjt:  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTCACTTATAGAGATTGGCATGAAATGCTACCTTTCGCATTGCATGGATATAGAATATCAGTCCGCACGTCAACAGGGGCAACCCCTCTTTCACTAGTGTATGG
TTTCGAAGCAGTTTTACCTGTTGAAGTTGAGGTGTCATCCCTTAGGGTAATCCAAGAGGTAGAACTAGATGAAGCAAAGTGGGCTCAAGTAAGGTACAAGCAACTGAATT
TCATAGAAGAAAGGATACTGACTGCACTATGTAAAGGACAGTTGTACCAAAAGAAAATAACATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTCACTTATAGAGATTGGCATGAAATGCTACCTTTCGCATTGCATGGATATAGAATATCAGTCCGCACGTCAACAGGGGCAACCCCTCTTTCACTAGTGTATGG
TTTCGAAGCAGTTTTACCTGTTGAAGTTGAGGTGTCATCCCTTAGGGTAATCCAAGAGGTAGAACTAGATGAAGCAAAGTGGGCTCAAGTAAGGTACAAGCAACTGAATT
TCATAGAAGAAAGGATACTGACTGCACTATGTAAAGGACAGTTGTACCAAAAGAAAATAACATGA
Protein sequenceShow/hide protein sequence
MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKIT