CuGenDBv2

Gene ID	IVF0010553
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mitochondrial
Genome location	chr04:3786229..3788075
RNA-Seq Expression	IVF0010553
Synteny	IVF0010553
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
InterPro domains	IPR019716 - Ribosomal protein L53, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0063266.1 Mitochondrial [Cucumis melo var. makuwa]

2.64e-79

99.17

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIKPR
        AWPVIIPEEELKQPLTSIK R
Subjt:  AWPVIIPEEELKQPLTSIKPR

XP_004147839.1 uncharacterized protein LOC101217531 [Cucumis sativus]

1.13e-78

93.6

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNA+K+KESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATS  AQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIKPRKAED
        AWPVIIP+EELKQP T IKPRKAED
Subjt:  AWPVIIPEEELKQPLTSIKPRKAED

XP_008466507.1 PREDICTED: uncharacterized protein LOC103503897 [Cucumis melo]

1.23e-84

100

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIKPRKAEDN
        AWPVIIPEEELKQPLTSIKPRKAEDN
Subjt:  AWPVIIPEEELKQPLTSIKPRKAEDN

XP_022139291.1 uncharacterized protein LOC111010210 [Momordica charantia]

5.18e-75

90.4

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQCNA K+KESNPACQLIVKRRTDD PPQIAVTFVNGVEEVFDATS  AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIKPRKAED
         WP++IPEEEL+QP  SIKPRKAED
Subjt:  AWPVIIPEEELKQPLTSIKPRKAED

XP_038896893.1 uncharacterized protein LOC120085105 [Benincasa hispida]

5.39e-77

92.8

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQCNA K+KESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATS  AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIKPRKAED
         WPVIIP+EELKQPL+ IKPRKAED
Subjt:  AWPVIIPEEELKQPLTSIKPRKAED

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGG5 Uncharacterized protein

3.6e-59

93.6

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNA+K+KESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATS  AQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIKPRKAED
        AWPVIIP+EELKQP T IKPRKAED
Subjt:  AWPVIIPEEELKQPLTSIKPRKAED

A0A1S3CRE8 uncharacterized protein LOC103503897

1.1e-63

100

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIKPRKAEDN
        AWPVIIPEEELKQPLTSIKPRKAEDN
Subjt:  AWPVIIPEEELKQPLTSIKPRKAEDN

A0A5D3E6Q7 Mitochondrial

1.2e-59

99.17

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIKPR
        AWPVIIPEEELKQPLTSIK R
Subjt:  AWPVIIPEEELKQPLTSIKPR

A0A6J1CC86 uncharacterized protein LOC111010210

2.2e-56

90.4

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQCNA K+KESNPACQLIVKRRTDD PPQIAVTFVNGVEEVFDATS  AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIKPRKAED
         WP++IPEEEL+QP  SIKPRKAED
Subjt:  AWPVIIPEEELKQPLTSIKPRKAED

A0A6J1IEW0 uncharacterized protein LOC111473560 isoform X1

6.3e-56

90.4

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL  CMEFLAQCNA K+KESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATS  AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIKPRKAED
         WPVIIP+EEL QP  SIKPRKAED
Subjt:  AWPVIIPEEELKQPLTSIKPRKAED

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

1.6e-51

77.6

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFN LDPRLA C+EFLAQCNA K+KESNP CQ++VKRRTD+ PPQI VTFVNGVEE FDA + SAQ+IR MIL+KGQ LETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIKPRKAED
         WPVIIP+EEL Q    +KPRKAED
Subjt:  AWPVIIPEEELKQPLTSIKPRKAED

Sequences

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CDS sequence

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ATGTTGAAGTTCCTATCTAAAGTGAAGATCGAATTCAATGCTCTCGATCCACGTTTAGCGTGTTGTATGGAATTCTTGGCGCAGTGTAATGCTACCAAGTCGAAGGAATC
CAACCCCGCTTGCCAGTTGATCGTCAAGCGCCGAACAGACGACCATCCTCCCCAGATCGCCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTTGACGCTACCTCTATTT
CTGCTCAAACAATCAGGAATATGATTCTTGAAAAGGGTCAGCTCCTTGAGACCGAGCAAATGTTCCGAGAAGCTGGGGAAGCTTGGCCCGTTATCATTCCCGAGGAGGAG
CTCAAACAACCCCTTACCAGTATCAAGCCTAGAAAAGCGGAAGACAATTGA

mRNA sequence

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Protein sequence

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MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGEAWPVIIPEEE
LKQPLTSIKPRKAEDN

IVF0010553 (gene) of Melon (IVF77) v1 genome