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IVF0010557 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010557
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDiphthamide biosynthesis protein 3-like
Genome locationchr01:117848..119869
RNA-Seq ExpressionIVF0010557
SyntenyIVF0010557
Gene Ontology termsGO:0002098 - tRNA wobble uridine modification (biological process)
GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007872 - DPH-type metal-binding domain
IPR036671 - DPH-type metal-binding domain superfamily
IPR044248 - Diphthamide biosynthesis protein 3/4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137002.1 diphthamide biosynthesis protein 3 [Cucumis sativus]5.91e-5796.47Show/hide
Query:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDM+WN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLD SNQKNNKGLEPSKQHPIVVA
Subjt:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
XP_008454889.1 PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo]4.31e-59100Show/hide
Query:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
Subjt:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
XP_022136247.1 diphthamide biosynthesis protein 3-like [Momordica charantia]2.72e-5389.41Show/hide
Query:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDM+WN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFL DS+QKNNKG++PSKQ PIVVA
Subjt:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
XP_022972367.1 diphthamide biosynthesis protein 3-like [Cucurbita maxima]3.30e-5492.94Show/hide
Query:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL DS+ KNNKGL+PSKQ PIVVA
Subjt:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
XP_038887330.1 diphthamide biosynthesis protein 3-like [Benincasa hispida]3.43e-5696.47Show/hide
Query:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL DSNQKNNKGLEPSKQ PIVVA
Subjt:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
TrEMBL top hitse value%identityAlignment
A0A0A0K4W9 DPH-type MB domain-containing protein2.0e-4296.47Show/hide
Query:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDM+WN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLD SNQKNNKGLEPSKQHPIVVA
Subjt:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
A0A1S3BZL5 diphthamide biosynthesis protein 3-like4.9e-44100Show/hide
Query:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
Subjt:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
A0A5A7SJN1 Diphthamide biosynthesis protein 3-like4.9e-44100Show/hide
Query:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
Subjt:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
A0A6J1C519 diphthamide biosynthesis protein 3-like1.2e-3989.41Show/hide
Query:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDM+WN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFL DS+QKNNKG++PSKQ PIVVA
Subjt:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
A0A6J1I4L9 diphthamide biosynthesis protein 3-like2.5e-4092.94Show/hide
Query:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL DS+ KNNKGL+PSKQ PIVVA
Subjt:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
SwissProt top hitse value%identityAlignment
Q21102 DPH3 homolog4.9e-1757.38Show/hide
Query:  YDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED +++EE   + YPCPCGD F+I +E L++GE++A+CPSCSL I VIY+ EDF+
Subjt:  YDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
Q6CMG4 Diphthamide biosynthesis protein 33.7e-1749.4Show/hide
Query:  SYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVV
        +YD+VEIEDM ++ + Q FTYPCPCGD FQI+ +D+  GE+IA CPSCSL I V+++ ED ++   + N   LEP  +  + V
Subjt:  SYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVV
Q6VUC1 DPH3 homolog6.4e-1757.38Show/hide
Query:  YDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED  ++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F+
Subjt:  YDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
Q9UT33 Diphthamide biosynthesis protein 32.9e-1743.37Show/hide
Query:  YDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
        YD++E+ED  ++     +T+PCPCGD F+I+ EDL+LGE++ARCPSCSL + VIY+ ++F++  N  +          PI++A
Subjt:  YDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
Q9VGQ9 DPH3 homolog8.3e-1754.41Show/hide
Query:  YDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKN
        +D+VEIED +++EE + + YPCPCGD FQI+KE+L  GEE+A CPSCSL I VIY+ E F  + ++++
Subjt:  YDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKN
Arabidopsis top hitse value%identityAlignment
AT2G15910.1 CSL zinc finger domain-containing protein7.0e-3579.27Show/hide
Query:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPI
        MSYDDVEIEDM+WNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNMEDF +D+ +KNN   EP  +HP+
Subjt:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPI
AT2G15910.2 CSL zinc finger domain-containing protein6.3e-3678.82Show/hide
Query:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDM+WNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNMEDF +D+ +KNN   EP  +HP+ VA
Subjt:  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTACGACGACGTGGAGATTGAAGACATGGACTGGAACGAGGAACTACAGGCCTTCACGTACCCTTGCCCCTGCGGCGACTTGTTCCAGATCACCAAGGAGGATCT
TAAGCTCGGTGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACAGTCATCTACAACATGGAAGATTTTCTGGATGACTCCAATCAGAAGAATAACAAAGGAC
TCGAGCCCTCTAAACAACACCCTATCGTAGTCGCTTAA
mRNA sequenceShow/hide mRNA sequence
CGCGGTTTTCCGGATCAATTCGGAGCGCCCAACACAAACCCAAATCCCTCCATCTTCTTCCTTTACCTTCCGAACTCGGCGTTTCTCACTCGCCGTCGCCTCGGGATCCA
CCTCAGCAATCATGTCCTACGACGACGTGGAGATTGAAGACATGGACTGGAACGAGGAACTACAGGCCTTCACGTACCCTTGCCCCTGCGGCGACTTGTTCCAGATCACC
AAGGAGGATCTTAAGCTCGGTGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACAGTCATCTACAACATGGAAGATTTTCTGGATGACTCCAATCAGAAGAA
TAACAAAGGACTCGAGCCCTCTAAACAACACCCTATCGTAGTCGCTTAATAATTCAGAACCGTCGAATTCAAATCATGGTGTCGCTGCAGCAGCTGAGATGAAATTTTGT
GAACCATTGTCAATTCTGAAGATGATCTTCTTTGGCATTAAAGTTTTTTCCTTTGCTTTTCATTACTCTTTTACAGAATTGGTCTACGAAATAGAGGAAGGTAGAGTTGC
GTGTGGAAAAATGTATTAAAGTACTATTTTTGTTCCTTCACAAAGTAATTTATAGATTCTTGATATTTTCACAGCCGAATGTAGTGAGTGGTGAATTCTTTTGTCGAAGT
AAATCTGATAATCAAAAGAAACTGTAGACATAGAATGGACGAAAGCTCTAATAATCTAAAATGGTTTGAAT
Protein sequenceShow/hide protein sequence
MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLEPSKQHPIVVA