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IVF0010562 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010562
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr04:17162856..17163104
RNA-Seq ExpressionIVF0010562
SyntenyIVF0010562
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038025.1 Enzymatic polyprotein [Cucumis melo var. makuwa]3.02e-4190.24Show/hide
Query:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
        MTRQEDEA L+TKN +MSTLVGASTQQEFNSVVNNVVVNLSDDN+DLPED SPAS N+VDDLDYDPYEGLDINDPFLDTQPY
Subjt:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
KAA0054115.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.22e-4189.02Show/hide
Query:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
        MTRQEDEA L+TKN +MSTL GAS QQEFNSVVNNVVVNLSDDN+DL EDASPAS NDVDDLDYDPYEGLDINDPFLDTQPY
Subjt:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
KAA0058437.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.25e-47100Show/hide
Query:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
        MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
Subjt:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
KAA0066358.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]4.17e-4189.02Show/hide
Query:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
        MTRQEDEA L+TKN +MSTL GASTQQEFNSVVNNVVVNLSDDN+DLPEDASPAS NDVDDLDY+PYEGLDINDPFLD QPY
Subjt:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
TYK28077.1 polyprotein [Cucumis melo var. makuwa]5.31e-4191.46Show/hide
Query:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
        MTRQEDEA L+TKN +MSTL GASTQQEFNSVVNNVVVNLSDDN+DLPEDASPAS NDVDDLDYDPYEGLDINDPFLDTQPY
Subjt:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
TrEMBL top hitse value%identityAlignment
A0A5A7SR64 Polyprotein7.0e-3290.24Show/hide
Query:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
        MTRQEDEA L+TKN +MSTL GASTQQEFNSVVNNVVVNLSDDN+DLPEDASPAS NDVDDLDYDPY GLDINDPFLDTQPY
Subjt:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
A0A5A7T975 Enzymatic polyprotein4.1e-3290.24Show/hide
Query:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
        MTRQEDEA L+TKN +MSTLVGASTQQEFNSVVNNVVVNLSDDN+DLPED SPAS N+VDDLDYDPYEGLDINDPFLDTQPY
Subjt:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
A0A5A7VIK9 Retrotransposable element Tf21.2e-3189.02Show/hide
Query:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
        MTRQEDEA L+TKN +MSTL GASTQQEFNSVVNNVVVNLSDDN+DLPED SPAS N+VDDLDYDPYEGLDINDPFLDTQPY
Subjt:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
A0A5D3BCD5 Retrotransposable element Tf21.2e-36100Show/hide
Query:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
        MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
Subjt:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
A0A5D3DW87 Polyprotein1.1e-3291.46Show/hide
Query:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
        MTRQEDEA L+TKN +MSTL GASTQQEFNSVVNNVVVNLSDDN+DLPEDASPAS NDVDDLDYDPYEGLDINDPFLDTQPY
Subjt:  MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAGGCAAGAGGACGAGGCCCTTCTCGTCACCAAAAACCCAATCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAATAACGTCGT
TGTGAACCTTTCAGACGATAACAACGATTTACCAGAAGACGCTTCCCCAGCCTCCGGTAATGATGTCGATGATCTTGACTATGACCCATACGAAGGCCTCGACATCAACG
ACCCATTTTTGGACACACAACCATATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTAGGCAAGAGGACGAGGCCCTTCTCGTCACCAAAAACCCAATCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAATAACGTCGT
TGTGAACCTTTCAGACGATAACAACGATTTACCAGAAGACGCTTCCCCAGCCTCCGGTAATGATGTCGATGATCTTGACTATGACCCATACGAAGGCCTCGACATCAACG
ACCCATTTTTGGACACACAACCATATTAG
Protein sequenceShow/hide protein sequence
MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY