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IVF0010578 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010578
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionMitochondrial 28S Ribosomal protein
Genome locationchr11:19474324..19476325
RNA-Seq ExpressionIVF0010578
SyntenyIVF0010578
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR032053 - Mitochondrial 28S ribosomal protein S34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143137.1 uncharacterized protein LOC101207989 [Cucumis sativus]1.25e-9395.17Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG
        MAVANRTAISRALDFSRLSSSF+RTF+SSSPSTSSSNPNASP+SSQTKRRKKKKNLFEV+QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS
        IAHKNG PIVEAPKKISGVHKRCWKYIASLP  GESKTSAEVQTS
Subjt:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS

XP_008464074.1 PREDICTED: uncharacterized protein LOC103502049 [Cucumis melo]1.36e-97100Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG
        MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS
        IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS
Subjt:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS

XP_022944512.1 uncharacterized protein LOC111448948 [Cucurbita moschata]5.44e-7981.38Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG
        M+VANR+AIS AL FSRLSSSF R+FT+SSPS S+ NPNA  +S++TKRRKKKKNLFEV+QFLPNWGVGYHVAK+HWDEISYQITK+NLYKSGTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS
        +AHK+G  I EAPKKISGVHKRCWKYIASLPR G+S  SAEVQTS
Subjt:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS

XP_023532313.1 uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo]1.59e-7878.85Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG
        MAVANRT ISRALDFSRL+SSFIR F++S+ STSSS+P+AS ++S+ KRRKKKKNLFEVIQFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPR-----------LGESKTSAEVQTS
        IAHKNG PI EAPKKISGVHKRCWKYI SLPR           LGES  SAE QTS
Subjt:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPR-----------LGESKTSAEVQTS

XP_038900676.1 uncharacterized protein LOC120087826 [Benincasa hispida]2.23e-8588.11Show/hide
Query:  VANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIA
        VANRTAISRALDFSRLSS+FIRTF++SSPSTSSSNPNAS +S++ KRRKKKKNLFEV+QFLPNWGVGYHVAK+HWDEISYQITKINLYK+GTHGKAWGIA
Subjt:  VANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIA

Query:  HKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS
        HK+G PI EAPKKISGVHKRCWKYIASLPR GES  SAEVQTS
Subjt:  HKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS

TrEMBL top hitse value%identityAlignment
A0A0A0KH76 Uncharacterized protein4.7e-7195.17Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG
        MAVANRTAISRALDFSRLSSSF+RTF+SSSPSTSSSNPNASP+SSQTKRRKKKKNLFEV+QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS
        IAHKNG PIVEAPKKISGVHKRCWKYIASLP  GESKTSAEVQTS
Subjt:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS

A0A1S3CKN2 uncharacterized protein LOC1035020494.5e-74100Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG
        MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS
        IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS
Subjt:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS

A0A5A7V0Y6 Uncharacterized protein4.5e-74100Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG
        MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS
        IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS
Subjt:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS

A0A6J1FVV3 uncharacterized protein LOC1114489486.3e-6081.38Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG
        M+VANR+AIS AL FSRLSSSF R+FT+SSPS S+ NPNA  +S++TKRRKKKKNLFEV+QFLPNWGVGYHVAK+HWDEISYQITK+NLYKSGTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS
        +AHK+G  I EAPKKISGVHKRCWKYIASLPR G+S  SAEVQTS
Subjt:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS

A0A6J1G714 uncharacterized protein LOC1114514481.1e-5978.85Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG
        MAVANRT ISRALDFSRL+SSFIR F++S+ STSSS+P+AS ++S+ KRRKKKKNLFEVIQFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPR-----------LGESKTSAEVQTS
        IAHKNG PI EAPKKISGVHKRCWKYI SLPR           LGES  SAEVQ+S
Subjt:  IAHKNGMPIVEAPKKISGVHKRCWKYIASLPR-----------LGESKTSAEVQTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G52370.1 unknown protein1.6e-3957.82Show/hide
Query:  MAVANRTAISR--ALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKA
        M + NR AISR   +   RLS + +R F   S + +S NP+   S S   +R+KKKNL EV QFLPNWG+GYH+AK+HW+ ISY+ITKINLYK G HGKA
Subjt:  MAVANRTAISR--ALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKA

Query:  WGIAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS
        WGI HK+G+   EAPKKISGVHKRCWKYI +L +   + TSA VQ +
Subjt:  WGIAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS

AT5G58990.1 unknown protein2.5e-4058.11Show/hide
Query:  MAVANRTAISR--ALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTK-RRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGK
        M + NR AISR   +    LS S +R F S++PS +S+  + +PSS   K +R+KKKNL EV QFLPNWG+GYH+AK+HW+ ISY+ITKINLYK G HGK
Subjt:  MAVANRTAISR--ALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTK-RRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGK

Query:  AWGIAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS
        AWGI HK+G+   EAPKKISGVHKRCWKYI +L +   + T+A+VQ +
Subjt:  AWGIAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTCGCCAACAGAACTGCGATCAGTCGAGCCCTAGATTTCTCTAGGTTATCTTCTTCCTTTATCAGAACCTTCACCTCCTCTTCGCCCTCAACCTCCTCTTCCAA
CCCCAATGCCTCGCCTTCTTCATCTCAAACCAAACGGAGGAAGAAGAAGAAGAACCTCTTCGAAGTAATTCAGTTTTTGCCCAACTGGGGAGTTGGATACCATGTCGCCA
AATCTCACTGGGATGAAATTTCCTACCAGATCACCAAAATCAATCTCTACAAGAGTGGCACGCACGGCAAGGCATGGGGCATTGCTCATAAAAATGGCATGCCGATTGTT
GAAGCTCCAAAGAAAATCAGCGGAGTTCACAAGCGCTGCTGGAAGTATATCGCTAGCTTGCCACGTTTGGGAGAAAGCAAAACATCAGCTGAAGTTCAGACTTCATGA
mRNA sequenceShow/hide mRNA sequence
TTTTCACTTCCCATTTCTCTAAACCCTGCTGCAGAGATCTGCGAAGTAGCGACACAGAGAGAAGGCCACAACCAAAACTAAGAGAGACGCCAATGGCTGTCGCCAACAGA
ACTGCGATCAGTCGAGCCCTAGATTTCTCTAGGTTATCTTCTTCCTTTATCAGAACCTTCACCTCCTCTTCGCCCTCAACCTCCTCTTCCAACCCCAATGCCTCGCCTTC
TTCATCTCAAACCAAACGGAGGAAGAAGAAGAAGAACCTCTTCGAAGTAATTCAGTTTTTGCCCAACTGGGGAGTTGGATACCATGTCGCCAAATCTCACTGGGATGAAA
TTTCCTACCAGATCACCAAAATCAATCTCTACAAGAGTGGCACGCACGGCAAGGCATGGGGCATTGCTCATAAAAATGGCATGCCGATTGTTGAAGCTCCAAAGAAAATC
AGCGGAGTTCACAAGCGCTGCTGGAAGTATATCGCTAGCTTGCCACGTTTGGGAGAAAGCAAAACATCAGCTGAAGTTCAGACTTCATGACTGCAGAGAAATCTCAGTTG
CTGATTCTTTTTGGCCAACCTTATTTCCTGGTTCAAAGAGTTTTGAGGTGTTCCTTTTATCGGGGAGCTATATAAAAGTACTCATAAAAAGACTATTGCTTGATTAATAT
GGTTGTGTTAATTGGAATTGCTTTTCAAACTGTAATTTTGTAAGATTGTTTTAGTTGGCAATCCCAATTTTATTTTATCTTTTCGTTTTATTGACTTCAGTAAATATGAG
TTTGACATATAATCTAGATTTGGTATTTGAAAATTGCTTTTCAGACTGTGATC
Protein sequenceShow/hide protein sequence
MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGMPIV
EAPKKISGVHKRCWKYIASLPRLGESKTSAEVQTS