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IVF0010637 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010637
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:8098655..8099155
RNA-Seq ExpressionIVF0010637
SyntenyIVF0010637
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032450.1 hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa]6.71e-2947.95Show/hide
Query:  MLQTRIFPCVAAERIFIFIFTHVLQPR--SSSSQICYSKKIFIFNKLHQEDDHLKY---VTTEKI---VGSNMLQPRRSSSQVYCSREYCRLKYVVAEKI
        MLQTRIFP VAA+RIFIFIF+HVLQ R  SSSS   Y  +         ED HL     V  E+I   + SNMLQP+RSSSQVYCSRE CRL+YV  EK 
Subjt:  MLQTRIFPCVAAERIFIFIFTHVLQPR--SSSSQICYSKKIFIFNKLHQEDDHLKY---VTTEKI---VGSNMLQPRRSSSQVYCSREYCRLKYVVAEKI

Query:  VVSNML-----------YREGHRLKYVTTEKIVILKHCNREEHHLHFLTYVVAEAINIFIFMRRKQSSSSM
        +VS +L           +REG  LKYV  EKI +LK             YV AE I +   ++ ++SSS +
Subjt:  VVSNML-----------YREGHRLKYVTTEKIVILKHCNREEHHLHFLTYVVAEAINIFIFMRRKQSSSSM

KAA0035317.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.17e-2946.2Show/hide
Query:  MLQTRIFPCVAAERIFIFIFTHVLQPRSSSSQICYSKKIFIFNKLHQEDDHLKYVTTEKIVGSNMLQPRRSSSQVYCSREYCRLKYVVAEKIVVSNMLYR
        MLQTRIFP VAA+RIFI IF+H     SSSSQIC S+K          D HLKY+  E +V S+MLQ R SSS +YCSR   R+KYV AEK+V SNML++
Subjt:  MLQTRIFPCVAAERIFIFIFTHVLQPRSSSSQICYSKKIFIFNKLHQEDDHLKYVTTEKIVGSNMLQPRRSSSQVYCSREYCRLKYVVAEKIVVSNMLYR

Query:  EGHRLKYVTTEKIV---ILKH--------CNREEHHLHF--------LTYVVAEAINIFIFMRRKQSSSSM
        +   LKY+  EK+V   IL+         C RE+  L +        L YVV E I +   ++ ++SSS +
Subjt:  EGHRLKYVTTEKIV---ILKH--------CNREEHHLHF--------LTYVVAEAINIFIFMRRKQSSSSM

KAA0035946.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.55e-3651.92Show/hide
Query:  VAAERIFIFIFTHVLQPRSSSSQICYSKKIFIFNKLHQEDDHLKYVTTEKIVGSNMLQPRRSSSQVYCSREYCRLKYVVAEKIVVSNMLYREGHRLKYVT
        V AE++ I   +++LQPR SSSQIC SKKIFI N+LHQEDDHLK+VT E+++ SNML PRR SSQ+ CSRE   LKYVVAEK+VVSNM  REG RLKYV 
Subjt:  VAAERIFIFIFTHVLQPRSSSSQICYSKKIFIFNKLHQEDDHLKYVTTEKIVGSNMLQPRRSSSQVYCSREYCRLKYVVAEKIVVSNMLYREGHRLKYVT

Query:  TEKIVILK-----------HCNREEHHLHFLTYVVAEAINIFIFMRRKQSSSSMRH
         EK+++              C    HHL                 RR +SSSSM++
Subjt:  TEKIVILK-----------HCNREEHHLHFLTYVVAEAINIFIFMRRKQSSSSMRH

KAA0046208.1 hypothetical protein E6C27_scaffold8039G00010 [Cucumis melo var. makuwa]8.06e-3044.33Show/hide
Query:  MLQTRIFPCVAAERIFIFIFTHVLQPR---SSSSQICYSKKIFIFNKLHQEDDHLKYVTTEKIVGSNMLQPRRSSSQVYCSREYCRLKYVVAEKIVV---
        MLQTRIFPCV  +RIFIFIF+HVLQPR   SSSSQIC S+K F           LKY+  EK+V S +LQPR SSSQ+ C R    LKYV +EKIV    
Subjt:  MLQTRIFPCVAAERIFIFIFTHVLQPR---SSSSQICYSKKIFIFNKLHQEDDHLKYVTTEKIVGSNMLQPRRSSSQVYCSREYCRLKYVVAEKIVV---

Query:  ------------SNMLYREGHR-LKYVTTEKIVILKH---------------CNREEHHLHF--------LTYVVAEAINIFIFMRRKQSSSSM
                    S +  R G R LKYV  EKIV+LK+               C RE H L +        L YV AE I +   ++ ++SSS +
Subjt:  ------------SNMLYREGHR-LKYVTTEKIVILKH---------------CNREEHHLHF--------LTYVVAEAINIFIFMRRKQSSSSM

KAA0051981.1 hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa]1.41e-2741.03Show/hide
Query:  MLQTRIFPCVAAERIFIFIFTH--------------------------------VLQPRSSSSQICYSKKIFIFNKLHQEDDHLKYVTTEKIVGSNMLQP
        MLQT IFP VA +RIFIFIF+H                                +LQPR SSS+ICY+++        ++   LKYV  EKI+ SNMLQP
Subjt:  MLQTRIFPCVAAERIFIFIFTH--------------------------------VLQPRSSSSQICYSKKIFIFNKLHQEDDHLKYVTTEKIVGSNMLQP

Query:  RRSSSQVYCSREYCRLKYVVAEKIVVSNMLY-----------REGHRLKYVTTEKIVILKHCNREEHHLHFLTYVVAEAINIFIFMRRKQSSSSM
        RRSSSQ+ CS++   LKY+VAEK+VVS +L            REG  LKYV TEKI++LK             YV AE I +   ++ ++SSS +
Subjt:  RRSSSQVYCSREYCRLKYVVAEKIVVSNMLY-----------REGHRLKYVTTEKIVILKHCNREEHHLHFLTYVVAEAINIFIFMRRKQSSSSM

TrEMBL top hitse value%identityAlignment
A0A5A7SNS6 Uncharacterized protein1.1e-2247.95Show/hide
Query:  MLQTRIFPCVAAERIFIFIFTHVLQPR--SSSSQICYSKKIFIFNKLHQEDDHLKY---VTTEKI---VGSNMLQPRRSSSQVYCSREYCRLKYVVAEKI
        MLQTRIFP VAA+RIFIFIF+HVLQ R  SSSS   Y  +         ED HL     V  E+I   + SNMLQP+RSSSQVYCSRE CRL+YV  EK 
Subjt:  MLQTRIFPCVAAERIFIFIFTHVLQPR--SSSSQICYSKKIFIFNKLHQEDDHLKY---VTTEKI---VGSNMLQPRRSSSQVYCSREYCRLKYVVAEKI

Query:  VVSNML-----------YREGHRLKYVTTEKIVILKHCNREEHHLHFLTYVVAEAINIFIFMRRKQSSSSM
        +VS +L           +REG  LKYV  EKI +LK             YV AE I +   ++ ++SSS +
Subjt:  VVSNML-----------YREGHRLKYVTTEKIVILKHCNREEHHLHFLTYVVAEAINIFIFMRRKQSSSSM

A0A5A7T146 Retrotransposon gag protein4.6e-2445.03Show/hide
Query:  MLQTRIFPCVAAERIFIFIFTHVLQPRSSSSQICYSKKIFIFNKLHQEDDHLKYVTTEKIVGSNMLQPRRSSSQVYCSREYCRLKYVVAEKIVVSNMLYR
        MLQTRIFP VAA+RIFI IF+H     SSSSQIC S          Q+D HLKY+  E +V S+MLQ R SSS +YCSR   R+KYV AEK+V SNML++
Subjt:  MLQTRIFPCVAAERIFIFIFTHVLQPRSSSSQICYSKKIFIFNKLHQEDDHLKYVTTEKIVGSNMLQPRRSSSQVYCSREYCRLKYVVAEKIVVSNMLYR

Query:  EGHRLKYVTTEKIVILK-----------HCNREEHHLHF--------LTYVVAEAINIFIFMRRKQSSSSM
        +   LKY+  EK+V+              C RE+  L +        L YVV E I +   ++ ++SSS +
Subjt:  EGHRLKYVTTEKIVILK-----------HCNREEHHLHF--------LTYVVAEAINIFIFMRRKQSSSSM

A0A5A7T154 Ty3-gypsy retrotransposon protein1.5e-3051.92Show/hide
Query:  VAAERIFIFIFTHVLQPRSSSSQICYSKKIFIFNKLHQEDDHLKYVTTEKIVGSNMLQPRRSSSQVYCSREYCRLKYVVAEKIVVSNMLYREGHRLKYVT
        V AE++ I   +++LQPR SSSQIC SKKIFI N+LHQEDDHLK+VT E+++ SNML PRR SSQ+ CSRE   LKYVVAEK+VVSNM  REG RLKYV 
Subjt:  VAAERIFIFIFTHVLQPRSSSSQICYSKKIFIFNKLHQEDDHLKYVTTEKIVGSNMLQPRRSSSQVYCSREYCRLKYVVAEKIVVSNMLYREGHRLKYVT

Query:  TEKIVI-----------LKHCNREEHHLHFLTYVVAEAINIFIFMRRKQSSSSMRH
         EK+++              C    HHL                 RR +SSSSM++
Subjt:  TEKIVI-----------LKHCNREEHHLHFLTYVVAEAINIFIFMRRKQSSSSMRH

A0A5A7TTL9 Uncharacterized protein3.0e-2344.33Show/hide
Query:  MLQTRIFPCVAAERIFIFIFTHVLQPR---SSSSQICYSKKIFIFNKLHQEDDHLKYVTTEKIVGSNMLQPRRSSSQVYCSREYCRLKYVVAEKIVV---
        MLQTRIFPCV  +RIFIFIF+HVLQPR   SSSSQIC S+K F           LKY+  EK+V S +LQPR SSSQ+ C R    LKYV +EKIV    
Subjt:  MLQTRIFPCVAAERIFIFIFTHVLQPR---SSSSQICYSKKIFIFNKLHQEDDHLKYVTTEKIVGSNMLQPRRSSSQVYCSREYCRLKYVVAEKIVV---

Query:  ------------SNMLYREGHR-LKYVTTEKIVILKH---------------CNREEHHLHF--------LTYVVAEAINIFIFMRRKQSSSSM
                    S +  R G R LKYV  EKIV+LK+               C RE H L +        L YV AE I +   ++ ++SSS +
Subjt:  ------------SNMLYREGHR-LKYVTTEKIVILKH---------------CNREEHHLHF--------LTYVVAEAINIFIFMRRKQSSSSM

A0A5D3DKF5 Uncharacterized protein5.6e-2245.56Show/hide
Query:  MLQTRIFPCVAAERIFIFIFTHVLQPRSSSSQICYSKKIFIFNKLHQEDDHLKY---VTTEKI---VGSNMLQPRRSSSQVYCSREYCRLKYVVAEKIVV
        MLQTRIFPCVA ++IFIFIF+H LQ R  SS   + +          ED HL     V  E+I   + SNMLQP+RSSSQVYCSRE   LKYV  EK++V
Subjt:  MLQTRIFPCVAAERIFIFIFTHVLQPRSSSSQICYSKKIFIFNKLHQEDDHLKY---VTTEKI---VGSNMLQPRRSSSQVYCSREYCRLKYVVAEKIVV

Query:  SNMLY-----------REGHRLKYVTTEKIVILKHCNREEHHLHFLTYVVAEAINIFIFMRRKQSSSSM
        S ML            REG+ LKYV  EKI++LK             YV AE I +   ++ ++SSS +
Subjt:  SNMLY-----------REGHRLKYVTTEKIVILKHCNREEHHLHFLTYVVAEAINIFIFMRRKQSSSSM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACAGACGAGGATCTTTCCATGTGTTGCAGCCGAGAGGATCTTCATCTTCATCTTCACACATGTGTTGCAGCCGAGAAGCTCGTCATCGCAAATATGTTACAGTAA
GAAGATCTTCATCTTCAATAAATTACATCAAGAGGATGATCATCTCAAATATGTTACAACTGAGAAGATAGTCGGCTCAAATATGTTGCAGCCAAGAAGATCATCGTCTC
AAGTATATTGCAGCCGAGAATATTGTCGTCTCAAATATGTTGTAGCTGAGAAGATCGTCGTCTCAAATATGTTGTACCGAGAAGGTCATCGTCTCAAATATGTTACAACA
GAGAAGATTGTCATCTTAAAACATTGCAACCGAGAAGAGCATCATCTTCATTTTCTCACATATGTTGTAGCCGAGGCGATCAACATCTTCATCTTTATGCGACGTAAGCA
ATCATCATCTTCAATGCGACACAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTACAGACGAGGATCTTTCCATGTGTTGCAGCCGAGAGGATCTTCATCTTCATCTTCACACATGTGTTGCAGCCGAGAAGCTCGTCATCGCAAATATGTTACAGTAA
GAAGATCTTCATCTTCAATAAATTACATCAAGAGGATGATCATCTCAAATATGTTACAACTGAGAAGATAGTCGGCTCAAATATGTTGCAGCCAAGAAGATCATCGTCTC
AAGTATATTGCAGCCGAGAATATTGTCGTCTCAAATATGTTGTAGCTGAGAAGATCGTCGTCTCAAATATGTTGTACCGAGAAGGTCATCGTCTCAAATATGTTACAACA
GAGAAGATTGTCATCTTAAAACATTGCAACCGAGAAGAGCATCATCTTCATTTTCTCACATATGTTGTAGCCGAGGCGATCAACATCTTCATCTTTATGCGACGTAAGCA
ATCATCATCTTCAATGCGACACAGATGA
Protein sequenceShow/hide protein sequence
MLQTRIFPCVAAERIFIFIFTHVLQPRSSSSQICYSKKIFIFNKLHQEDDHLKYVTTEKIVGSNMLQPRRSSSQVYCSREYCRLKYVVAEKIVVSNMLYREGHRLKYVTT
EKIVILKHCNREEHHLHFLTYVVAEAINIFIFMRRKQSSSSMRHR