CuGenDBv2

Gene ID	IVF0010643
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr01:27902046..27902544
RNA-Seq Expression	IVF0010643
Synteny	IVF0010643
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0041588.1 retrotransposon protein [Cucumis melo var. makuwa]

1.14e-89

93.98

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Query:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD
        MAEKLPGCQVRATT+IDCRIKTLKRTFQAI EMR PACSGFGWNDEEKCIVAEKELFDNWV+SHPAAKGLLNKPFPYYDELTYVF RDRATDRF ETFAD
Subjt:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS
        VGSNEPGGGYDRFDMGDGNEDFPPVYSQG+D+S
Subjt:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS

KAA0057590.1 retrotransposon protein [Cucumis melo var. makuwa]

1.34e-96

100

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Query:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD
        MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD
Subjt:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS
        VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS
Subjt:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS

KAA0065477.1 retrotransposon protein [Cucumis melo var. makuwa]

1.07e-89

93.23

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Query:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD
        MAEKLPGCQVRATT+IDCRIKTLKRTFQAIAEMR PACSGFGWNDEEKCIVAEKELFDNWV+SHPAAKGLLNKPFPYYDELTYVF RDRAT RF ETFAD
Subjt:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS
        VGSNEPGGGYDRFDMGDGNEDF PVYSQG+D+S
Subjt:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS

TYJ96194.1 retrotransposon protein [Cucumis melo var. makuwa]

3.26e-89

93.98

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Query:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD
        MAEKLPGCQVRATT+IDCRIKTLKRTFQAIAEMR PACSGFGWNDEEKCIVAEKELFDNWV+SHPAAKGLLNKPFPYYDELTYVF RDRAT RF ETFAD
Subjt:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS
        VGSNEPGGGYDRFDMGDGNEDFPPVYSQG+D+S
Subjt:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]

6.36e-90

93.98

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Query:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD
        MAEKLPGCQVRATT+IDCRIKTLKRTFQAIAEMR PACSGFGWNDEEKCIVAEKELFDNWV+SHPAAKGLLNKPFPYYDELTYVF RDRAT RF ETFAD
Subjt:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS
        VGSNEPGGGYDRFDMGDGNEDFPPVYSQG+D+S
Subjt:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TFA4 Retrotransposon protein

2.1e-70

93.98

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Query:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD
        MAEKLPGCQVRATT+IDCRIKTLKRTFQAI EMR PACSGFGWNDEEKCIVAEKELFDNWV+SHPAAKGLLNKPFPYYDELTYVF RDRATDRF ETFAD
Subjt:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS
        VGSNEPGGGYDRFDMGDGNEDFPPVYSQG+D+S
Subjt:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS

A0A5A7TRV1 Retrotransposon protein

4.7e-70

93.98

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Query:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD
        MAEKLPGCQVRATT+IDCRIKTLKRTFQAIAEMR PACSGFGWNDEEKCIVAEKELFDNWV+SHPAAKGLLNKPFPYYDELTYVF RDRAT RF ETFAD
Subjt:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS
        VGSNEPGGGYDRFDMGDGNEDFPPVYSQG+D+S
Subjt:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS

A0A5D3CWL2 Retrotransposon protein

4.7e-70

93.98

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Query:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD
        MAEKLPGCQVRATT+IDCRIKTLKRTFQAIAEMR PACSGFGWNDEEKCIVAEKELFDNWV+SHPAAKGLLNKPFPYYDELTYVF RDRAT RF ETFAD
Subjt:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS
        VGSNEPGGGYDRFDMGDGNEDFPPVYSQG+D+S
Subjt:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS

A0A5D3DBP4 Retrotransposon protein

9.2e-74

100

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Query:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD
        MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD
Subjt:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS
        VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS
Subjt:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS

A0A5D3DCZ1 Retrotransposon protein

4.7e-70

93.98

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Query:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD
        MAEKLPGCQVRATT+IDCRIKTLKRTFQAIAEMR PACSGFGWNDEEKCIVAEKELFDNWV+SHPAAKGLLNKPFPYYDELTYVF RDRAT RF ETFAD
Subjt:  MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS
        VGSNEPGGGYDRFDMGDGNEDFPPVYSQG+D+S
Subjt:  VGSNEPGGGYDRFDMGDGNEDFPPVYSQGIDLS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.2 unknown protein

1.1e-05

22.5

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Query:  IIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRF
        ++  R K L+R +  I  + +   +GF W+     ++A+ ++++ ++++HP A+    K  P Y  L ++F ++ +  R+
Subjt:  IIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRF

AT4G02210.1 unknown protein

5.6e-07

29.85

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Query:  IIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDEL
        ++  R K+L+R F AI  +      GF W++E + + A+  ++ +++K+H  A+  + +P PYY +L
Subjt:  IIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDEL

AT4G02210.2 unknown protein

5.6e-07

29.85

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Query:  IIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDEL
        ++  R K+L+R F AI  +      GF W++E + + A+  ++ +++K+H  A+  + +P PYY +L
Subjt:  IIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDEL

Sequences

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CDS sequence

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ATGGCGGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTATAATTGATTGTAGGATCAAGACACTGAAGCGAACATTCCAGGCAATTGCCGAAATGCGAGACCCAGC
GTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATTGTTGCGGAGAAGGAATTATTTGATAATTGGGTTAAGTCGCATCCTGCAGCAAAGGGACTCCTAAACAAAC
CATTCCCGTATTACGACGAACTTACATATGTCTTCGATCGCGATAGGGCGACCGATCGGTTCGTTGAGACATTCGCGGACGTGGGATCTAACGAGCCTGGTGGCGGATAT
GACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCTGTGTACAGCCAGGGAATTGACCTCTCGTAG

mRNA sequence

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Protein sequence

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MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVKSHPAAKGLLNKPFPYYDELTYVFDRDRATDRFVETFADVGSNEPGGGY
DRFDMGDGNEDFPPVYSQGIDLS

IVF0010643 (gene) of Melon (IVF77) v1 genome