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IVF0010667 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010667
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D1
Genome locationchr04:7685040..7688216
RNA-Seq ExpressionIVF0010667
SyntenyIVF0010667
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0034715 - pICln-Sm protein complex (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0034719 - SMN-Sm protein complex (cellular component)
GO:0000243 - commitment complex (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027141 - Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
IPR034102 - Small nuclear ribonucleoprotein D1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFP82007.1 small nuclear ribonucleoprotein sm d1 [Phtheirospermum japonicum]3.60e-5585.09Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP+GR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
XP_004150106.1 small nuclear ribonucleoprotein SmD1b [Cucumis sativus]1.78e-5585.96Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
XP_011079832.1 small nuclear ribonucleoprotein Sm D1-like isoform X1 [Sesamum indicum]1.78e-5585.96Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
XP_031100929.1 small nuclear ribonucleoprotein SmD1a-like [Ipomoea triloba]2.53e-5585.09Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP+GR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
XP_031113507.1 small nuclear ribonucleoprotein SmD1a [Ipomoea triloba]1.26e-5585.96Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
TrEMBL top hitse value%identityAlignment
A0A0A0LD16 Small nuclear ribonucleoprotein Sm D17.2e-4285.96Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
A0A1S3C0D0 Small nuclear ribonucleoprotein Sm D17.2e-4285.96Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
A0A6I9T6Z3 Small nuclear ribonucleoprotein Sm D17.2e-4285.96Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCE-----------AYSKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCE-----------AYSKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
A0A6J1DVC4 Small nuclear ribonucleoprotein Sm D17.2e-4285.96Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
A0A6P6B1N2 Small nuclear ribonucleoprotein Sm D11.2e-4185.09Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSVRGNNIRYYILPDS+NLETLLVEETPRVKPKKPTAGRPLGR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
SwissProt top hitse value%identityAlignment
P62314 Small nuclear ribonucleoprotein Sm D19.7e-2863.16Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKL++ETV+IELKNGT VHGTITG +              K + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
Q3ZC10 Small nuclear ribonucleoprotein Sm D19.7e-2863.16Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKL++ETV+IELKNGT VHGTITG +              K + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
Q4R5F6 Small nuclear ribonucleoprotein Sm D19.7e-2863.16Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKL++ETV+IELKNGT VHGTITG +              K + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
Q9SSF1 Small nuclear ribonucleoprotein SmD1a2.6e-4179.82Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+ +GR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
Q9SY09 Small nuclear ribonucleoprotein SmD1b5.9e-4179.82Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLG
        MKLVRFLMKLNNETVSIELKNGT+VHGTITG +              KGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+ P G
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLG

Query:  RGRGRGRGRGRGRG
        RGRGRGRGRGRGRG
Subjt:  RGRGRGRGRGRGRG
Arabidopsis top hitse value%identityAlignment
AT3G07590.1 Small nuclear ribonucleoprotein family protein1.9e-4279.82Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+ +GR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
AT3G07590.2 Small nuclear ribonucleoprotein family protein1.9e-4279.82Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR
        MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+ +GR
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGR

Query:  GRGRGRGRGRGRGR
        GRGRGRGRGRGRGR
Subjt:  GRGRGRGRGRGRGR
AT4G02840.1 Small nuclear ribonucleoprotein family protein4.2e-4279.82Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLG
        MKLVRFLMKLNNETVSIELKNGT+VHGTITG +              KGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+ P G
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLG

Query:  RGRGRGRGRGRGRG
        RGRGRGRGRGRGRG
Subjt:  RGRGRGRGRGRGRG
AT4G02840.2 Small nuclear ribonucleoprotein family protein6.7e-4072.58Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTIT---------------------GCEAYSKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPK
        MKLVRFLMKLNNETVSIELKNGT+VHGTIT                       +   KGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPK
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTIT---------------------GCEAYSKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPK

Query:  KPTAGR-PLGRGRGRGRGRGRGRG
        KPTAG+ P GRGRGRGRGRGRGRG
Subjt:  KPTAGR-PLGRGRGRGRGRGRGRG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGCTGTGAAGCTTACTCTAA
AGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATCCTACCTGACAGCTTGAATCTTGAAACTTTACTTGTTGAAGAGACAC
CCAGGGTCAAGCCCAAGAAACCAACTGCAGGAAGGCCTTTGGGACGTGGACGAGGGCGCGGCCGTGGGCGTGGTCGTGGACGTGGACGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGCTGTGAAGCTTACTCTAA
AGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATCCTACCTGACAGCTTGAATCTTGAAACTTTACTTGTTGAAGAGACAC
CCAGGGTCAAGCCCAAGAAACCAACTGCAGGAAGGCCTTTGGGACGTGGACGAGGGCGCGGCCGTGGGCGTGGTCGTGGACGTGGACGCTAG
Protein sequenceShow/hide protein sequence
MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYSKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR