CuGenDBv2

Gene ID	IVF0010690
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr01:13543634..13544032
RNA-Seq Expression	IVF0010690
Synteny	IVF0010690
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0055085 - transmembrane transport (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domains	IPR025314 - Domain of unknown function DUF4219

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0059855.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.28e-79

93.18

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Query:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN
        MDAI SS+F+SISPLIFDGDNYQVWAVRM+AYMEALDIWEAVEE+YEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFA VS TIFTRIMTLRS YEIWN
Subjt:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET
        YLKSEYEGDERIKGMR LNLIREFELQKMKET
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET

KAA0068197.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.77e-75

93.94

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Query:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN
        MDAI SS+F+SISPLIFDGDNYQVWAVRM+AYMEALDIWEAVEE+YEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFA VSSTIFTRIMTLRS YEIWN
Subjt:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET
        YLKSEYEGDERIKGMR+LNLIREFELQKMKET
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET

TYK12703.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.22e-79

94.7

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Query:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN
        MDAI SS+F+SISPLIFDGDNYQVWAVRM+AYMEALDIWEAVEE+YEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFA VSSTIFTRIMTLRS YEIWN
Subjt:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET
        YLKSEYEGDERIKGMRVLNLIREFELQKMKET
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET

TYK27376.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.05e-75

94.7

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Query:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN
        MDAI SS+F+SISPLIFDGDNYQVWAVRM+AYMEALDIWEAVEE+YEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFA VSSTIFTRIMTLRS YEIWN
Subjt:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET
        YLKSEYEGDERIKGMRVLNLIREFELQKMKET
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET

XP_008456224.1 PREDICTED: uncharacterized protein LOC103496228 [Cucumis melo]

4.46e-76

89.31

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Query:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN
        MDAIASS+FSSISP IFDGDNYQVW VRM+AYMEALDIWEAVEE+YEIPALP+NPTMAQIK QKEKKTKK KAKACLFA VSSTIFTRI+TLRS YEIWN
Subjt:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKE
        YLKS+Y GDERI+GMRVLNLIREFELQKMKE
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKE

TrEMBL top hits

e value

%identity

Alignment

A0A5D3BL45 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-62

94.7

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Query:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN
        MDAI SS+F+SISPLIFDGDNYQVWAVRM+AYMEALDIWEAVEE+YEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFA VSSTIFTRIMTLRS YEIWN
Subjt:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET
        YLKSEYEGDERIKGMRVLNLIREFELQKMKET
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET

A0A5D3CLD6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-62

94.7

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Query:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN
        MDAI SS+F+SISPLIFDGDNYQVWAVRM+AYMEALDIWEAVEE+YEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFA VSSTIFTRIMTLRS YEIWN
Subjt:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET
        YLKSEYEGDERIKGMRVLNLIREFELQKMKET
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET

A0A5D3DBU0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-62

94.7

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Query:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN
        MDAI SS+F+SISPLIFDGDNYQVWAVRM+AYMEALDIWEAVEE+YEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFA VSSTIFTRIMTLRS YEIWN
Subjt:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET
        YLKSEYEGDERIKGMRVLNLIREFELQKMKET
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET

A0A5D3DMJ1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-62

94.7

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Query:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN
        MDAI SS+F+SISPLIFDGDNYQVWAVRM+AYMEALDIWEAVEE+YEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFA VSSTIFTRIMTLRS YEIWN
Subjt:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET
        YLKSEYEGDERIKGMRVLNLIREFELQKMKET
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET

A0A5D3E2V7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-62

94.7

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Query:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN
        MDAI SS+F+SISPLIFDGDNYQVWAVRM+AYMEALDIWEAVEE+YEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFA VSSTIFTRIMTLRS YEIWN
Subjt:  MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET
        YLKSEYEGDERIKGMRVLNLIREFELQKMKET
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKET

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGACGCCATAGCAAGTTCCAATTTCTCTTCAATTTCTCCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGAAAGCTTATATGGAAGCTTTGGA
TATTTGGGAAGCAGTGGAAGAGAATTATGAAATTCCTGCTCTTCCAGACAATCCTACCATGGCACAAATCAAGGCGCAAAAAGAGAAGAAGACAAAGAAATCCAAGGCAA
AGGCATGTCTGTTTGCTGTAGTCTCATCTACTATCTTCACTAGAATTATGACTCTGAGATCAACATATGAGATATGGAATTATCTCAAGTCAGAGTATGAGGGAGATGAA
AGAATCAAAGGAATGCGTGTGCTAAACTTGATTCGAGAATTCGAGTTGCAGAAGATGAAGGAAACATAA

mRNA sequence

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Protein sequence

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MDAIASSNFSSISPLIFDGDNYQVWAVRMKAYMEALDIWEAVEENYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAVVSSTIFTRIMTLRSTYEIWNYLKSEYEGDE
RIKGMRVLNLIREFELQKMKET

IVF0010690 (gene) of Melon (IVF77) v1 genome