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IVF0010702 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010702
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description3-isopropylmalate dehydrogenase 3
Genome locationchr07:16287081..16289843
RNA-Seq ExpressionIVF0010702
SyntenyIVF0010702
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0009098 - leucine biosynthetic process (biological process)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003862 - 3-isopropylmalate dehydrogenase activity (molecular function)
GO:0051287 - NAD binding (molecular function)
InterPro domainsIPR004429 - Isopropylmalate dehydrogenase
IPR024084 - Isopropylmalate dehydrogenase-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061172.1 3-isopropylmalate dehydrogenase 3 [Cucumis melo var. makuwa]7.22e-77100Show/hide
Query:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGCAKEDGLSSM
        MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGCAKEDGLSSM
Subjt:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGCAKEDGLSSM

Query:  NLKKEEKWIPLLGIRLI
        NLKKEEKWIPLLGIRLI
Subjt:  NLKKEEKWIPLLGIRLI

PRQ50491.1 putative 3-isopropylmalate dehydrogenase [Rosa chinensis]9.39e-1986.27Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAG
        +DKANPLATVLSAAMLLKYGLGEENAA RIEAVVLDTL RGFR  DIY +G
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAG

XP_008462868.1 PREDICTED: uncharacterized protein LOC103501151 isoform X1 [Cucumis melo]1.95e-56100Show/hide
Query:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGC
        MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGC
Subjt:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGC

XP_008462869.1 PREDICTED: thioredoxin-like protein 4B isoform X2 [Cucumis melo]8.73e-57100Show/hide
Query:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGC
        MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGC
Subjt:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGC

XP_008462870.1 PREDICTED: 3-isopropylmalate dehydrogenase 3, chloroplastic-like isoform X3 [Cucumis melo]9.09e-77100Show/hide
Query:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGCAKEDGLSSM
        MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGCAKEDGLSSM
Subjt:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGCAKEDGLSSM

Query:  NLKKEEKWIPLLGIRLI
        NLKKEEKWIPLLGIRLI
Subjt:  NLKKEEKWIPLLGIRLI

TrEMBL top hitse value%identityAlignment
A0A1S3CHX2 3-isopropylmalate dehydrogenase 3, chloroplastic-like isoform X31.1e-58100Show/hide
Query:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGCAKEDGLSSM
        MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGCAKEDGLSSM
Subjt:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGCAKEDGLSSM

Query:  NLKKEEKWIPLLGIRLI
        NLKKEEKWIPLLGIRLI
Subjt:  NLKKEEKWIPLLGIRLI

A0A1S3CIE3 uncharacterized protein LOC103501151 isoform X12.9e-43100Show/hide
Query:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGC
        MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGC
Subjt:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGC

A0A1S3CJH3 thioredoxin-like protein 4B isoform X22.9e-43100Show/hide
Query:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGC
        MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGC
Subjt:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGC

A0A5A7UZ40 3-isopropylmalate dehydrogenase 31.1e-58100Show/hide
Query:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGCAKEDGLSSM
        MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGCAKEDGLSSM
Subjt:  MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGCAKEDGLSSM

Query:  NLKKEEKWIPLLGIRLI
        NLKKEEKWIPLLGIRLI
Subjt:  NLKKEEKWIPLLGIRLI

A0A6J1DGT0 3-isopropylmalate dehydrogenase1.2e-1484.62Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGC
        KDKANPLATVLSAAMLLKYGLGEENAA R+E  VLDTL RGFR  DIY AGC
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGC

SwissProt top hitse value%identityAlignment
P29102 3-isopropylmalate dehydrogenase, chloroplastic5.1e-1374.51Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAG
        +DKANPLAT+LSAAMLLKYGLGEE AA RIE  VL  L +GFR  DIY AG
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAG

P93832 3-isopropylmalate dehydrogenase 2, chloroplastic1.5e-1274.51Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAG
        +DKANPLAT+LSAAMLLKYGLGEE AA RIE  VL  L  GFR  DIY AG
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAG

Q7NUC2 3-isopropylmalate dehydrogenase2.6e-0958.82Show/hide
Query:  ANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGCAK
        ANPLAT+LSAAM+L+Y  G+E AA R+E  V   L +G+R  DIY AGC K
Subjt:  ANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGCAK

Q9FMT1 3-isopropylmalate dehydrogenase 1, chloroplastic1.7e-1360.56Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIY-----LAGCAK--EDGLSSMNLK
        +DKANPLAT+LSAAMLLKYGLGEE AA RIE  V+D L +GFR  DIY     L GC +  E+ L S+  K
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIY-----LAGCAK--EDGLSSMNLK

Q9SA14 3-isopropylmalate dehydrogenase 3, chloroplastic6.6e-1359.15Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIY-----LAGCAK--EDGLSSMNLK
        +DKANPLAT+LSAAMLLKYGLGEE AA  IE  V+D L +GFR  DIY     L GC +  E+ L S++ K
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIY-----LAGCAK--EDGLSSMNLK

Arabidopsis top hitse value%identityAlignment
AT1G31180.1 isopropylmalate dehydrogenase 34.7e-1459.15Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIY-----LAGCAK--EDGLSSMNLK
        +DKANPLAT+LSAAMLLKYGLGEE AA  IE  V+D L +GFR  DIY     L GC +  E+ L S++ K
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIY-----LAGCAK--EDGLSSMNLK

AT1G80560.1 isopropylmalate dehydrogenase 21.0e-1374.51Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAG
        +DKANPLAT+LSAAMLLKYGLGEE AA RIE  VL  L  GFR  DIY AG
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAG

AT5G14200.1 isopropylmalate dehydrogenase 11.2e-1460.56Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIY-----LAGCAK--EDGLSSMNLK
        +DKANPLAT+LSAAMLLKYGLGEE AA RIE  V+D L +GFR  DIY     L GC +  E+ L S+  K
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIY-----LAGCAK--EDGLSSMNLK

AT5G14200.3 isopropylmalate dehydrogenase 14.7e-1472.55Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAG
        +DKANPLAT+LSAAMLLKYGLGEE AA RIE  V+D L +GFR  DIY  G
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAACCACGCTTCTGTGAACCACCACTCTGAACGATTCTGCATGGTCGACGACCTCGAACGTCCATCGTCGATGCTACCGGCAACCTTCGTTGGGGTTGGGGCGCT
TCACAGCAAGGATAAAGCAAATCCATTGGCAACAGTTCTCAGTGCTGCTATGCTTCTAAAGTATGGCCTCGGTGAAGAAAATGCTGCCACAAGAATTGAGGCTGTAGTTT
TGGATACACTAGGCAGAGGATTTAGAATTGATGACATATACTTGGCTGGATGTGCAAAGGAGGATGGGCTATCTTCTATGAACCTTAAGAAAGAAGAGAAGTGGATTCCC
TTATTAGGGATACGATTGATAAGCTTGCTAAGTGCGCACGAGAAGTATCCAAGTTTGCTTCAATAA
mRNA sequenceShow/hide mRNA sequence
CCCCACCTTTTCATTAAGAAAATTTTAATTAAGAAACTCTTTCCCTCTACCCATTACCCAACCCGGAAATCGCACCAAGCCCTAAAAACATCTCCATCTCTACCTCCTCC
TCTCCTTCACCGGCGAACCACGCTTCTGCATGAACCACCAACTGAAGAACGGGCGATGGCGAACCACGCTTCTGTGAACCACCACTCTGAACGATTCTGCATGGTCGACG
ACCTCGAACGTCCATCGTCGATGCTACCGGCAACCTTCGTTGGGGTTGGGGCGCTTCACAGCAAGGATAAAGCAAATCCATTGGCAACAGTTCTCAGTGCTGCTATGCTT
CTAAAGTATGGCCTCGGTGAAGAAAATGCTGCCACAAGAATTGAGGCTGTAGTTTTGGATACACTAGGCAGAGGATTTAGAATTGATGACATATACTTGGCTGGATGTGC
AAAGGAGGATGGGCTATCTTCTATGAACCTTAAGAAAGAAGAGAAGTGGATTCCCTTATTAGGGATACGATTGATAAGCTTGCTAAGTGCGCACGAGAAGTATCCAAGTT
TGCTTCAATAACATTAGTTGATATTGATTTAGAAGAAATGCAGGTTTATGTCAAGTACTTTGACATAACTCTTATACCGTCAGCTATTTTCTTCTTCAATGCCCATCATA
TGAAGATGGATTCAGGATTTGACGCACAAATGGACTTCA
Protein sequenceShow/hide protein sequence
MANHASVNHHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLGRGFRIDDIYLAGCAKEDGLSSMNLKKEEKWIP
LLGIRLISLLSAHEKYPSLLQ