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IVF0010779 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010779
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description50S ribosomal protein L2, chloroplastic
Genome locationchr12:1056556..1056957
RNA-Seq ExpressionIVF0010779
SyntenyIVF0010779
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR002171 - Ribosomal protein L2
IPR008991 - Translation protein SH3-like domain superfamily
IPR014722 - Ribosomal protein L2, domain 2
IPR014726 - Ribosomal protein L2, domain 3
IPR022669 - Ribosomal protein L2, C-terminal
IPR022671 - Ribosomal protein L2, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031820.1 ribosomal protein L2 [Cucumis melo var. makuwa]6.90e-71100Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQ
        GEGRAQ
Subjt:  GEGRAQ

KAD7116973.1 hypothetical protein E3N88_04241 [Mikania micrantha]7.83e-6277.27Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MP GTTIHNIEITLGKGGQLA+AA  VAK IAKE K AT +LPS EV LISK+CS  VGQ+ NVGVNQKS  RA S+ WLGK PVVRGVVMNPVDHPH G
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQIGRKNPQPLRVILHLE-EVEKGINIV
        GEGR Q+  KNPQPL VILHLE EVEKGIN+V
Subjt:  GEGRAQIGRKNPQPLRVILHLE-EVEKGINIV

KAG4914348.1 hypothetical protein JHK87_051905 [Glycine soja]1.97e-6178.03Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ+ NVGVNQK+  RA S+CWLGK PVVRGVVMNPVDHPH G
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQIGRKNPQPLRVILHLEE-VEKGINIV
        GEGRA IGRKNPQ L V LHLEE VEKG NIV
Subjt:  GEGRAQIGRKNPQPLRVILHLEE-VEKGINIV

QHO02027.1 50S ribosomal protein [Arachis hypogaea]9.97e-6579.55Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ+ NVGVNQK+  RA S+CWLGK PVVRGVVMNPVDHPH G
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQIGRKNPQPLRVILHLEE-VEKGINIV
        GEGRA IGRKNPQ L VILHLEE VEKGINIV
Subjt:  GEGRAQIGRKNPQPLRVILHLEE-VEKGINIV

YP_009627433.1 ribosomal protein L2 [Tinospora cordifolia]1.58e-6380.3Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ+ NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH G
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQIGRKNPQPLRVILHLEE-VEKGINIV
        GEGRA IGRKNPQPL VIL LEE VEKGINIV
Subjt:  GEGRAQIGRKNPQPLRVILHLEE-VEKGINIV

TrEMBL top hitse value%identityAlignment
A0A4D6IUD4 Ribosomal protein L22.7e-4980.3Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ+ NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH G
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQIGRKNPQPLRVILHL-EEVEKGINIV
        GEGRA IGRKNPQPL VIL L EEVEKGINIV
Subjt:  GEGRAQIGRKNPQPLRVILHL-EEVEKGINIV

A0A5A7SM35 Ribosomal protein L2 (Chloroplast)3.1e-53100Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQ
        GEGRAQ
Subjt:  GEGRAQ

A0A650F363 Ribosomal protein L21.5e-4778.36Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ+ NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH G
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQIGRKNPQPLRVILHL-EEVEKGINIVRI
        GEGRA IGRK PQ L VILHL EEVEKG NIV I
Subjt:  GEGRAQIGRKNPQPLRVILHL-EEVEKGINIVRI

A0A6G5NV90 50S ribosomal protein L23.3e-4778.36Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MP GT IHNIEITLGKGGQL +AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ+ NVGVNQKS  RA S+ WLGK PVVRGVVMNPVDHPH G
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQIGRKNPQPLRVILHL-EEVEKGINIVRI
        GEGRA IGRKNPQ L VILHL EEVEKGINIV I
Subjt:  GEGRAQIGRKNPQPLRVILHL-EEVEKGINIVRI

A0A7T8IMF6 Ribosomal protein L22.5e-4776.87Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ+ NVGVNQKS  +A S+CWLGK PVVRGVVMNPVDHPH G
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQIGRKNPQPLRVILHL-EEVEKGINIVRI
        GEG  Q+  KNPQPL VILHL EEVEKGINIV I
Subjt:  GEGRAQIGRKNPQPLRVILHL-EEVEKGINIVRI

SwissProt top hitse value%identityAlignment
A1XFZ7 50S ribosomal protein L2, chloroplastic9.6e-4479.46Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT RLPS EV LISK+CS  VGQ+ NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH G
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQIGRKNP
        GEGRA IGRK P
Subjt:  GEGRAQIGRKNP

P21434 50S ribosomal protein L2, chloroplastic1.1e-4473.13Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV  ISK+CS  VGQ+ NVGVNQKS  RA S+ WLGK PVVRGVVMNPVDHP   
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQIGRKNPQPLRVILHL-EEVEKGINIVRI
         +G  Q+  KNPQPL VILHL EEVEKGINIV I
Subjt:  GEGRAQIGRKNPQPLRVILHL-EEVEKGINIVRI

Q09FY3 50S ribosomal protein L2, chloroplastic1.6e-4378.57Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS   GQ+ NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH G
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQIGRKNP
        GEGRA IGRKNP
Subjt:  GEGRAQIGRKNP

Q0G9F5 50S ribosomal protein L2-A, chloroplastic9.6e-4479.46Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT RLPS EV LISK+CS  VGQ+ NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH G
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQIGRKNP
        GEGRA IGRK P
Subjt:  GEGRAQIGRKNP

Q0G9H8 50S ribosomal protein L2-B, chloroplastic9.6e-4479.46Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT RLPS EV LISK+CS  VGQ+ NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH G
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQIGRKNP
        GEGRA IGRK P
Subjt:  GEGRAQIGRKNP

Arabidopsis top hitse value%identityAlignment
AT2G44065.1 Ribosomal protein L2 family1.0e-1640.19Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGK-LATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHK
        M  GT IHNIE+  G+G ++ +AA   AK + +  K     +LPS +   I+  C   +G + N     K   +A    WLG  P VRGV MNP DHPH 
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGK-LATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHK

Query:  GGEGRAQ
        GGEG+++
Subjt:  GGEGRAQ

AT2G44065.2 Ribosomal protein L2 family1.0e-1640.19Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGK-LATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHK
        M  GT IHNIE+  G+G ++ +AA   AK + +  K     +LPS +   I+  C   +G + N     K   +A    WLG  P VRGV MNP DHPH 
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGK-LATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHK

Query:  GGEGRAQ
        GGEG+++
Subjt:  GGEGRAQ

AT3G51190.1 Ribosomal protein L2 family9.9e-1235.71Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIA--KEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSF---------ERAESQCWLGKHPVVRGV
        +P G  I N+E+ +G  G LA+A+   A  IA   E      +LPS    ++  +C  ++GQ+   G  +K            +A+  CW    PVVRGV
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIA--KEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSF---------ERAESQCWLGKHPVVRGV

Query:  VMNPVDHPHKGG
         MNPV+HPH GG
Subjt:  VMNPVDHPHKGG

ATCG00830.1 ribosomal protein L23.4e-4477.68Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MP GT IHNIEITLG+GGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ+ NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH G
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQIGRKNP
        GEGRA IGRK P
Subjt:  GEGRAQIGRKNP

ATCG01310.1 ribosomal protein L23.4e-4477.68Show/hide
Query:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG
        MP GT IHNIEITLG+GGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ+ NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH G
Subjt:  MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKG

Query:  GEGRAQIGRKNP
        GEGRA IGRK P
Subjt:  GEGRAQIGRKNP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTCAGGCACGACCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAAAGCAGCAGATGTTGTAGCGAAACGTATTGCAAAAGAGGGGAAATT
GGCCACATTCAGATTACCGTCTAGGGAGGTCTGTTTGATATCCAAAAGTTGCTCCGTAATAGTTGGGCAAATGGAGAATGTTGGGGTCAACCAGAAAAGTTTCGAAAGAG
CCGAATCTCAATGTTGGCTAGGTAAGCATCCTGTAGTAAGGGGAGTAGTTATGAACCCTGTAGACCATCCCCATAAGGGTGGTGAAGGGAGGGCCCAAATTGGTAGAAAA
AACCCGCAACCCCTTAGGGTTATCCTGCACTTGGAAGAAGTAGAAAAAGGAATCAATATAGTGAGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCTCAGGCACGACCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAAAGCAGCAGATGTTGTAGCGAAACGTATTGCAAAAGAGGGGAAATT
GGCCACATTCAGATTACCGTCTAGGGAGGTCTGTTTGATATCCAAAAGTTGCTCCGTAATAGTTGGGCAAATGGAGAATGTTGGGGTCAACCAGAAAAGTTTCGAAAGAG
CCGAATCTCAATGTTGGCTAGGTAAGCATCCTGTAGTAAGGGGAGTAGTTATGAACCCTGTAGACCATCCCCATAAGGGTGGTGAAGGGAGGGCCCAAATTGGTAGAAAA
AACCCGCAACCCCTTAGGGTTATCCTGCACTTGGAAGAAGTAGAAAAAGGAATCAATATAGTGAGAATTTGA
Protein sequenceShow/hide protein sequence
MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRK
NPQPLRVILHLEEVEKGINIVRI