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IVF0010818 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010818
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionClassical arabinogalactan protein 1-like
Genome locationchr07:16048724..16049374
RNA-Seq ExpressionIVF0010818
SyntenyIVF0010818
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061155.1 classical arabinogalactan protein 1-like [Cucumis melo var. makuwa]2.31e-5499.16Show/hide
Query:  MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASI
        MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPA APTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASI
Subjt:  MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASI

Query:  TFSVLGSAAVALYAVVLMI
        TFSVLGSAAVALYAVVLMI
Subjt:  TFSVLGSAAVALYAVVLMI

KGN53727.1 hypothetical protein Csa_015026 [Cucumis sativus]2.62e-3779.67Show/hide
Query:  MAIRSLVAMILVSFLIASAFAQSPTQSPS----KAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNG
        MAI SLVA+I VSF IASAFAQSP  SPS    K+PS +PS  SPKSSPA APTPSSLKSPPSPPS+SPSTSPS    PA+SP+SISSPPADAPAPSGNG
Subjt:  MAIRSLVAMILVSFLIASAFAQSPTQSPS----KAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNG

Query:  AASITFSVLGSAAVALYAVVLMI
        AASITFSV GS AVALYAVVLMI
Subjt:  AASITFSVLGSAAVALYAVVLMI

XP_022942993.1 classical arabinogalactan protein 1-like [Cucurbita moschata]6.71e-3168.5Show/hide
Query:  MAIRSLVAMILVSFLIASAFAQSP--------TQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAP
        MAIR  V M+ V+ LI SA AQSP        T+SPSKAPS+SPSV+SPKSSPA APTP+SLKSPPSPP+ SPS SPS       SPSSISSPPADAPAP
Subjt:  MAIRSLVAMILVSFLIASAFAQSP--------TQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAP

Query:  SGNGAASITFSVLGSAAVALYAVVLMI
        SGN AASI+FS+ GS A  LYA+VLMI
Subjt:  SGNGAASITFSVLGSAAVALYAVVLMI

XP_023542663.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]7.12e-3168.5Show/hide
Query:  MAIRSLVAMILVSFLIASAFAQSP--------TQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAP
        MAIR  V M++V+ LI SA AQSP        T+SPSKAPS+SPSV+SPKSSPA APTP+SL+SPPSPP+ SPS SPS SPS    PSSISSPPADAPAP
Subjt:  MAIRSLVAMILVSFLIASAFAQSP--------TQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAP

Query:  SGNGAASITFSVLGSAAVALYAVVLMI
        SGN AASI+ S+ GS A  LYA+VLMI
Subjt:  SGNGAASITFSVLGSAAVALYAVVLMI

XP_038877310.1 classical arabinogalactan protein 1 [Benincasa hispida]2.70e-3879.2Show/hide
Query:  MAIRSLVAMILVSFLIASAFAQSP------TQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSG
        MAIRS VAMILV+ LI SA AQSP      ++SPSKAPS SPSVKSPKSSPA APTPSSLKSPPSPPSTSP+TSPS   SPATSPS ISSPPADAPAPSG
Subjt:  MAIRSLVAMILVSFLIASAFAQSP------TQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSG

Query:  NGAASITFSVLGSAAVALYAVVLMI
        NGAASI+FSV GS AV LY VVL+I
Subjt:  NGAASITFSVLGSAAVALYAVVLMI

TrEMBL top hitse value%identityAlignment
A0A0A0KZB8 Uncharacterized protein4.7e-2979.67Show/hide
Query:  MAIRSLVAMILVSFLIASAFAQSPTQSPS----KAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNG
        MAI SLVA+I VSF IASAFAQSP  SPS    K+PS +PS  SPKSSPA APTPSSLKSPPSPPS+SPST    SPSPA+SP+SISSPPADAPAPSGNG
Subjt:  MAIRSLVAMILVSFLIASAFAQSPTQSPS----KAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNG

Query:  AASITFSVLGSAAVALYAVVLMI
        AASITFSV GS AVALYAVVLMI
Subjt:  AASITFSVLGSAAVALYAVVLMI

A0A5A7V5Q9 Classical arabinogalactan protein 1-like2.9e-4299.16Show/hide
Query:  MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASI
        MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPA APTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASI
Subjt:  MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASI

Query:  TFSVLGSAAVALYAVVLMI
        TFSVLGSAAVALYAVVLMI
Subjt:  TFSVLGSAAVALYAVVLMI

A0A6J1E9Q3 classical arabinogalactan protein 1-like2.8e-2168.5Show/hide
Query:  MAIRSLVAMILVSFLIASAFAQSPT--------QSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAP
        MAIRS V MILV+ LI SA AQSP         +SPSKAPS SPSVKSPKSSPA APTP+S              SPS+SPSPA SPSSISSPPADAPAP
Subjt:  MAIRSLVAMILVSFLIASAFAQSPT--------QSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAP

Query:  SGNGAASITFSVLGSAAVALYAVVLMI
        SG+GAASI+FSV GS AV LYAVVLMI
Subjt:  SGNGAASITFSVLGSAAVALYAVVLMI

A0A6J1FW49 classical arabinogalactan protein 1-like3.5e-2468.5Show/hide
Query:  MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAP
        MAIR  V M+ V+ LI SA AQ        SPT+SPSKAPS+SPSV+SPKSSPA APTP+SLKSPPSPP+ SPS SPS       SPSSISSPPADAPAP
Subjt:  MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAP

Query:  SGNGAASITFSVLGSAAVALYAVVLMI
        SGN AASI+FS+ GS A  LYA+VLMI
Subjt:  SGNGAASITFSVLGSAAVALYAVVLMI

A0A6J1JSK4 classical arabinogalactan protein 1-like9.6e-2265.35Show/hide
Query:  MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAP
        MA R  V M+ V+ LI SA AQ        SPT+SPSKAPS+SPSV+SPKSSPA APTP+SLKSPPSPP+ SPS SPS       SPSSISSPPADAPAP
Subjt:  MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAP

Query:  SGNGAASITFSVLGSAAVALYAVVLMI
        SGN AASI+ S+ GS A  L+A+V MI
Subjt:  SGNGAASITFSVLGSAAVALYAVVLMI

SwissProt top hitse value%identityAlignment
Q8LCN5 Classical arabinogalactan protein 17.1e-0644.7Show/hide
Query:  RSLVAMILVSFLIASAFAQSPTQSPSK----------------APSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPA
        +SLV ++L + LI+SA AQSP  +PS                 AP+ +P V SP  SPA A TP S  SPPSPP     T    + SPA SPS+IS  P 
Subjt:  RSLVAMILVSFLIASAFAQSPTQSPSK----------------APSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPA

Query:  DAPAPSGNGAASITFSVLGSAAVALYAVVLMI
        +AP P+  GA S  F+  GS AV L A VL+I
Subjt:  DAPAPSGNGAASITFSVLGSAAVALYAVVLMI

Arabidopsis top hitse value%identityAlignment
AT5G64310.1 arabinogalactan protein 15.0e-0744.7Show/hide
Query:  RSLVAMILVSFLIASAFAQSPTQSPSK----------------APSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPA
        +SLV ++L + LI+SA AQSP  +PS                 AP+ +P V SP  SPA A TP S  SPPSPP     T    + SPA SPS+IS  P 
Subjt:  RSLVAMILVSFLIASAFAQSPTQSPSK----------------APSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPA

Query:  DAPAPSGNGAASITFSVLGSAAVALYAVVLMI
        +AP P+  GA S  F+  GS AV L A VL+I
Subjt:  DAPAPSGNGAASITFSVLGSAAVALYAVVLMI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATTAGAAGTCTTGTTGCCATGATTTTAGTGTCTTTCTTGATCGCCTCTGCTTTCGCTCAATCTCCAACCCAATCACCGTCCAAGGCTCCATCGGTCTCTCCGTC
TGTTAAGTCCCCCAAATCCTCTCCGGCGTTTGCGCCTACTCCTTCCTCCTTGAAGTCTCCACCATCTCCTCCTTCTACTTCTCCTTCTACTTCGCCGTCCAGTTCTCCGT
CTCCGGCCACTTCTCCTTCCTCGATCTCCTCACCGCCCGCTGACGCTCCCGCTCCGTCAGGTAACGGCGCTGCTTCGATCACTTTTTCGGTGTTGGGGTCTGCTGCGGTT
GCGCTATACGCCGTCGTATTGATGATCTGA
mRNA sequenceShow/hide mRNA sequence
GTTCTTTTTAATTTCTCCTATATATACTCCCTCTCTGCTCCTCCTTTCTCCTCAATCACTCACCGCTCCTCTCTCTCCCTCTCCTCCACTTTCCATCTCTCTCATCTCTT
TACATTCATATTTTCCTTTCTATTCTTTCTATCTTTCCATTTCATTTCATATACAGAAATGGCGATTAGAAGTCTTGTTGCCATGATTTTAGTGTCTTTCTTGATCGCCT
CTGCTTTCGCTCAATCTCCAACCCAATCACCGTCCAAGGCTCCATCGGTCTCTCCGTCTGTTAAGTCCCCCAAATCCTCTCCGGCGTTTGCGCCTACTCCTTCCTCCTTG
AAGTCTCCACCATCTCCTCCTTCTACTTCTCCTTCTACTTCGCCGTCCAGTTCTCCGTCTCCGGCCACTTCTCCTTCCTCGATCTCCTCACCGCCCGCTGACGCTCCCGC
TCCGTCAGGTAACGGCGCTGCTTCGATCACTTTTTCGGTGTTGGGGTCTGCTGCGGTTGCGCTATACGCCGTCGTATTGATGATCTGAGAGCCAATCCGATTCGATTCGT
TCTGTTTGTCTGTCTATTTGAGTGATTTGTTGTAGCATTTTACGGAGTACATTTTATCTTGGTTTTGTATTTTTGTATTTTTTTTTTTTTTAACTTTTTCA
Protein sequenceShow/hide protein sequence
MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAV
ALYAVVLMI