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IVF0010826 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010826
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description30S ribosomal protein S17, chloroplastic
Genome locationchr01:31683770..31684263
RNA-Seq ExpressionIVF0010826
SyntenyIVF0010826
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019979 - Ribosomal protein S17, conserved site
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059310.1 30S ribosomal protein S17 [Cucumis melo var. makuwa]4.49e-9090.85Show/hide
Query:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP---------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP               AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP---------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV
        YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV

XP_004141765.1 30S ribosomal protein S17, chloroplastic [Cucumis sativus]9.71e-8586.59Show/hide
Query:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP---------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MS TLTSSSLLQIPP+QSLKKLSISSSFLHGSTPLSFLSK SSS                AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP---------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV
        YQAHDPDNQF+VGDFVELEKCRPISKMKTFLAIPVPAR SKKKA EGGEGGELGIPLESQQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV

XP_008462167.1 PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo]2.60e-8990.24Show/hide
Query:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP---------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSK SSSP               AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP---------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV
        YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV

XP_023000403.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita maxima]1.05e-7379.75Show/hide
Query:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP-----------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        M  TLT SS+LQIPPLQ  KKLS+S+SFLHGSTPLSFLSK + SP           AM+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP-----------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQE
        DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPAR SK+K AE    G+LGIPLESQQ+
Subjt:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQE

XP_038898716.1 30S ribosomal protein S17, chloroplastic [Benincasa hispida]2.25e-7784.38Show/hide
Query:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP-----------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        MS TLTSSSLLQIPPLQ LKKLSIS+SFLHGS+PL F SK S S            AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP-----------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV
        DPDNQFKVGDFVELEKCRPISKMKTFLAIPVP R+SKKKAAE G+G ELGIPLESQQEQV
Subjt:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV

TrEMBL top hitse value%identityAlignment
A0A0A0K952 Uncharacterized protein3.0e-6586.59Show/hide
Query:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP---------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MS TLTSSSLLQIPP+QSLKKLSISSSFLHGSTPLSFLSK SSS                AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP---------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV
        YQAHDPDNQF+VGDFVELEKCRPISKMKTFLAIPVPAR SKKKA EGGEGGELGIPLESQQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV

A0A1S3CGC8 30S ribosomal protein S17, chloroplastic1.0e-6890.24Show/hide
Query:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP---------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSK SSSP               AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP---------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV
        YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV

A0A5A7UW29 30S ribosomal protein S17, chloroplastic2.6e-6990.85Show/hide
Query:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP---------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP               AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP---------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV
        YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV

A0A6J1HJK0 30S ribosomal protein S17, chloroplastic3.3e-5679.11Show/hide
Query:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP-----------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        M  TL  SS+LQIPPLQ  KKLS+S+SFLHGSTPLSFLSK + SP           AM+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP-----------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQE
        DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPAR SK+K AE    G+LGIPLESQQ+
Subjt:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQE

A0A6J1KMI9 30S ribosomal protein S17, chloroplastic8.8e-5779.75Show/hide
Query:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP-----------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        M  TLT SS+LQIPPLQ  KKLS+S+SFLHGSTPLSFLSK + SP           AM+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSP-----------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQE
        DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPAR SK+K AE    G+LGIPLESQQ+
Subjt:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQE

SwissProt top hitse value%identityAlignment
P16180 30S ribosomal protein S17, chloroplastic3.8e-4166.67Show/hide
Query:  SLKKLSISSSFLHGSTPLSFLSKASSSP------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK
        SL+ L +SS F HGSTPLS LSK +S P            AM+++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK
Subjt:  SLKKLSISSSFLHGSTPLSFLSKASSSP------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK

Query:  CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQ
         RPISK K+F+A+PV AR ++K  AE G    LG+PLESQQ
Subjt:  CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQ

P17092 30S ribosomal protein S17, chloroplastic (Fragment)5.9e-3469.61Show/hide
Query:  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQ
        AM++++G+VVCA+ +KTVAVEV RLAPHPKY++RIR+KKKYQAHDP+N FKVGD V+L K RPISK KTFLA+P P+R SKK     G  GELGIPL+SQ
Subjt:  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQ

Query:  QE
        QE
Subjt:  QE

P82137 30S ribosomal protein S17, chloroplastic2.6e-3458.02Show/hide
Query:  SSSLLQIPPLQSLKKLSISSSFLHGST-------PLSFLSKASSSP------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
        S SLL+ PPL S    S  + FLHG+T         S LS +SS P            AMRS+QG+V+CATNDKTV VEVVRLAPHPKYKRR+R KKKYQ
Subjt:  SSSLLQIPPLQSLKKLSISSSFLHGST-------PLSFLSKASSSP------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ

Query:  AHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAE--GGEGGELGIPLESQQE
        AHDPDNQFKVGD+V+L+KCRPISK KTFLA+    R S     +       ELGIPLESQ E
Subjt:  AHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAE--GGEGGELGIPLESQQE

Q9TJN6 30S ribosomal protein S17, chloroplastic2.2e-2857.58Show/hide
Query:  LSISSSFLHGSTPLSFLSKASSSPAM-----RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFL
        L +SS F+  S P   LS   + PA+     R L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL+  RPISK K FL
Subjt:  LSISSSFLHGSTPLSFLSKASSSPAM-----RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFL

Query:  AIPVPARTSKKKAAEGGEGGELGIPLESQQEQ
        AIP+P R +++K+       +L  PL+S  +Q
Subjt:  AIPVPARTSKKKAAEGGEGGELGIPLESQQEQ

Q9ZST1 30S ribosomal protein S17, chloroplastic1.4e-2758.12Show/hide
Query:  GSTPLSFLSKASSSPAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAA
        G++P +  + A    A + L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL + RPISK K FLA+P+P R +++K+ 
Subjt:  GSTPLSFLSKASSSPAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAA

Query:  EGGEGGELGIPLESQQE
              +L  PL+SQ +
Subjt:  EGGEGGELGIPLESQQE

Arabidopsis top hitse value%identityAlignment
AT1G79850.1 ribosomal protein S172.7e-4266.67Show/hide
Query:  SLKKLSISSSFLHGSTPLSFLSKASSSP------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK
        SL+ L +SS F HGSTPLS LSK +S P            AM+++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK
Subjt:  SLKKLSISSSFLHGSTPLSFLSKASSSP------------AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK

Query:  CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQ
         RPISK K+F+A+PV AR ++K  AE G    LG+PLESQQ
Subjt:  CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCATTACAAAGCTTGAAGAAGCTCTCAATTTCTTCCTCTTTCCTCCATGGCTCAACTCCTCTCTCATT
CCTCTCTAAGGCCTCTTCATCACCGGCCATGAGGTCCCTGCAAGGCCGCGTGGTTTGTGCCACCAACGACAAAACCGTCGCCGTTGAGGTAGTCCGATTAGCGCCTCATC
CGAAATATAAGCGTCGGATTAGAATCAAGAAGAAGTACCAGGCGCATGATCCGGATAACCAGTTCAAGGTTGGAGATTTTGTGGAGCTTGAAAAATGCCGTCCGATTAGT
AAGATGAAGACGTTCCTGGCTATTCCGGTTCCAGCGAGGACTTCGAAGAAGAAAGCGGCGGAAGGCGGTGAGGGAGGAGAGCTTGGAATTCCATTGGAGTCTCAGCAAGA
ACAGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTACAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCATTACAAAGCTTGAAGAAGCTCTCAATTTCTTCCTCTTTCCTCCATGGCTCAACTCCTCTCTCATT
CCTCTCTAAGGCCTCTTCATCACCGGCCATGAGGTCCCTGCAAGGCCGCGTGGTTTGTGCCACCAACGACAAAACCGTCGCCGTTGAGGTAGTCCGATTAGCGCCTCATC
CGAAATATAAGCGTCGGATTAGAATCAAGAAGAAGTACCAGGCGCATGATCCGGATAACCAGTTCAAGGTTGGAGATTTTGTGGAGCTTGAAAAATGCCGTCCGATTAGT
AAGATGAAGACGTTCCTGGCTATTCCGGTTCCAGCGAGGACTTCGAAGAAGAAAGCGGCGGAAGGCGGTGAGGGAGGAGAGCTTGGAATTCCATTGGAGTCTCAGCAAGA
ACAGGTTTGA
Protein sequenceShow/hide protein sequence
MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPIS
KMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV