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IVF0010960 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0010960
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTranslation initiation factor 1
Genome locationchr02:3355580..3355797
RNA-Seq ExpressionIVF0010960
SyntenyIVF0010960
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
A5J1W9.1 RecName: Full=Translation initiation factor IF-1, chloroplastic [Cucumis sativus]6.53e-2674.24Show/hide
Query:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIY
        MKEQKRIS+S IT+SL NDMFWVCL+NEDPILGYV GRI++      +KIS+SCYDSTRTRR IIY
Subjt:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIY
AHM88719.1 translational initiation factor 1, partial [Lagenaria siceraria]2.96e-1765.52Show/hide
Query:  SKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCII
        S+  IT+SL N MFWVCLDNEDPILGYV GRI++      +KIS+SCYDSTRT+  II
Subjt:  SKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCII
QJA16179.1 translational initiation factor 1 [Siraitia grosvenorii]9.61e-1965.15Show/hide
Query:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQNI------KISISCYDSTRTRRCIIY
        MKEQKRI +  IT+SL N MFWVCLDN DPILGYV GRI++       KI++S YDSTRTR  IIY
Subjt:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQNI------KISISCYDSTRTRRCIIY
QKX48509.1 translational initiation factor 1 [Luffa acutangula]2.42e-1861.43Show/hide
Query:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN-----------IKISISCYDSTRTRRCII
        MKEQKRI +  IT+SL N MF VCLDNEDPILGYV GRI++           +KI++SCYDSTRTR  II
Subjt:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN-----------IKISISCYDSTRTRRCII
YP_004841818.1 translational initiation factor 1 [Cucumis melo subsp. melo]1.60e-2675.76Show/hide
Query:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIY
        MKEQKRIS+  IT+SL NDMFWVCLDNEDPILGYV GRIQ+      +KIS+SCYDSTRTRR IIY
Subjt:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIY
TrEMBL top hitse value%identityAlignment
A0A1S4EU46 translational initiation factor 11.2e-1875Show/hide
Query:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIYIL
        MKEQKRIS+  IT+SL NDMFWVCLDNEDPILGYV GRIQ+      +KIS+SCYDSTRTRR IIY L
Subjt:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIYIL
A0A1X9Q1P3 Translation initiation factor 13.3e-1873.53Show/hide
Query:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIYIL
        MKEQKRIS+S IT+SL NDMFWVCL+NEDPILGYV GRI++      +KIS+SCYDSTRTRR IIY L
Subjt:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIYIL
A0A343UM67 InfA3.3e-1873.53Show/hide
Query:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIYIL
        MKEQKRIS+S IT+SL NDMFWVCL+NEDPILGYV GRI++      +KIS+SCYDSTRTRR IIY L
Subjt:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIYIL
A0A6M8YGU1 Translational initiation factor 11.2e-1875Show/hide
Query:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIYIL
        MKEQKRIS+  IT+SL NDMFWVCLDNEDPILGYV GRIQ+      +KIS+SCYDSTRTRR IIY L
Subjt:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIYIL
G3ETT2 Translational initiation factor 11.2e-1875Show/hide
Query:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIYIL
        MKEQKRIS+  IT+SL NDMFWVCLDNEDPILGYV GRIQ+      +KIS+SCYDSTRTRR IIY L
Subjt:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIYIL
SwissProt top hitse value%identityAlignment
A1XFZ0 Translation initiation factor IF-1, chloroplastic8.5e-1155.56Show/hide
Query:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQ----------NIKISISCYDSTRTRRCIIYIL
        MKEQK I +  IT+SL N MFWV LDNED +LGYV GRI+           +KI +S YDSTR R  IIY L
Subjt:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQ----------NIKISISCYDSTRTRRCIIYIL
A5J1W9 Translation initiation factor IF-1, chloroplastic9.1e-2173.53Show/hide
Query:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIYIL
        MKEQKRIS+S IT+SL NDMFWVCL+NEDPILGYV GRI++      +KIS+SCYDSTRTRR IIY L
Subjt:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQN------IKISISCYDSTRTRRCIIYIL
P08698 Translation initiation factor IF-1, chloroplastic5.9e-1258.33Show/hide
Query:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQ----------NIKISISCYDSTRTRRCIIYIL
        MKEQK I +  IT+SL N MFWV LDNEDPILGYV GRI+           +KI +S YDSTR R  IIY L
Subjt:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQ----------NIKISISCYDSTRTRRCIIYIL
Q6EW17 Translation initiation factor IF-1, chloroplastic8.5e-1155.56Show/hide
Query:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQ----------NIKISISCYDSTRTRRCIIYIL
        MKEQK I +  IT+SL N MFWV LDNED +LGYV GRI+           +KI +S YDSTR R  IIY L
Subjt:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQ----------NIKISISCYDSTRTRRCIIYIL
Q95GN8 Translation initiation factor IF-1, chloroplastic8.5e-1155.56Show/hide
Query:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQ----------NIKISISCYDSTRTRRCIIYIL
        MKEQK I +  IT+SL N MFWV LDNED +LGYV GRI+           +KI +S YDSTR R  IIY L
Subjt:  MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQ----------NIKISISCYDSTRTRRCIIYIL
Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein6.5e-0639.34Show/hide
Query:  KRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQ----------NIKISISCYDSTRTR
        K + +  +T+SL N MF V L+N D ILGY+ G+I+           +K+ +S YDST+ R
Subjt:  KRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQ----------NIKISISCYDSTRTR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAGCAAAAAAGGATTTCTAAAAGTTTCATTACTAAATCACTTATCAATGATATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTTAGG
AAGGATTCAAAATATCAAAATTTCAATAAGTTGTTACGATTCAACTAGGACCAGAAGGTGTATAATTTATATACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAGCAAAAAAGGATTTCTAAAAGTTTCATTACTAAATCACTTATCAATGATATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTTAGG
AAGGATTCAAAATATCAAAATTTCAATAAGTTGTTACGATTCAACTAGGACCAGAAGGTGTATAATTTATATACTATGA
Protein sequenceShow/hide protein sequence
MKEQKRISKSFITKSLINDMFWVCLDNEDPILGYVLGRIQNIKISISCYDSTRTRRCIIYIL