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IVF0011024 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011024
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionProtein RADIALIS-like 1
Genome locationchr01:16540114..16540992
RNA-Seq ExpressionIVF0011024
SyntenyIVF0011024
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036165.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]1.31e-50100Show/hide
Query:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
        MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
Subjt:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
KAE8645640.1 hypothetical protein Csa_020521 [Cucumis sativus]5.58e-4693.59Show/hide
Query:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
        MASMTAHGPST WT  QNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVK HYQLLVEDVKHIESGEIPFPYRR T
Subjt:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]3.22e-4088Show/hide
Query:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYR
        MASM+AHG S  WTAKQNKAFEKALA+YDKDTP+RWLNVAKAIGGKTEEEVKRHYQLL+EDVKHIESG++PFPYR
Subjt:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYR
XP_008447026.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]9.78e-4083.33Show/hide
Query:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
        MASM+AHG ST WTA +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEE+VKRHYQLL+EDV HIE+G+IPFPYR  T
Subjt:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
XP_022952074.1 protein RADIALIS-like 1 [Cucurbita moschata]2.20e-4085.53Show/hide
Query:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRR
        MASM+AHG +  WTAKQNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVKRHYQLL++DVK IESGE+PFPY R
Subjt:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRR
TrEMBL top hitse value%identityAlignment
A0A0A0K3K0 SANT domain-containing protein1.4e-2984.62Show/hide
Query:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
        MASM+AHG S+ WTA +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEEEVKRHYQLL+EDV HIESG+IPFPYR+ T
Subjt:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
A0A1S3BGF0 protein RADIALIS-like 14.1e-2983.33Show/hide
Query:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
        MASM+AHG ST WTA +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEE+VKRHYQLL+EDV HIE+G+IPFPYR  T
Subjt:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
A0A1S3BGF6 protein RADIALIS-like 11.8e-2988Show/hide
Query:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYR
        MASM+AHG S  WTAKQNKAFEKALA+YDKDTP+RWLNVAKAIGGKTEEEVKRHYQLL+EDVKHIESG++PFPYR
Subjt:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYR
A0A5A7T3V4 Protein RADIALIS-like 12.4e-37100Show/hide
Query:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
        MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
Subjt:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
A0A6J1GKK4 protein RADIALIS-like 11.4e-2985.53Show/hide
Query:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRR
        MASM+AHG +  WTAKQNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVKRHYQLL++DVK IESGE+PFPY R
Subjt:  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRR
SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.7e-2264.94Show/hide
Query:  MASMTAHGPST-PWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRR
        MAS +    S+  WTAKQNKAFE+ALA YD+DTP RW NVAK +GGKT EEVKRHY+LLV+D+  IE+G +PFP  R
Subjt:  MASMTAHGPST-PWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRR
Q1A173 Protein RADIALIS-like 61.8e-2171.43Show/hide
Query:  TPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
        +PWT  QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+G +P P
Subjt:  TPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
Q58FS3 Transcription factor RADIALIS1.3e-2464.86Show/hide
Query:  TAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
        +  G   PW+AK+NKAFE+ALAVYDKDTP+RW NVA+A+ G+T EEVK+HY++LVED+K+IESG++PFP  R T
Subjt:  TAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
Q8GW75 Protein RADIALIS-like 55.7e-2067.19Show/hide
Query:  STPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
        S+ WT+KQNK FE+ALAVYDKDTP+RW NVAKA+G K+ EEVKRHY +LVED+ +IE   +P P
Subjt:  STPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
Q9SIJ5 Protein RADIALIS-like 21.0e-2163.16Show/hide
Query:  SMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
        SM+++G S  WT KQNKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE KR Y LLV D++ IE+G +PFP  + T
Subjt:  SMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 54.0e-2167.19Show/hide
Query:  STPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
        S+ WT+KQNK FE+ALAVYDKDTP+RW NVAKA+G K+ EEVKRHY +LVED+ +IE   +P P
Subjt:  STPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
AT1G75250.1 RAD-like 61.2e-2271.43Show/hide
Query:  TPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
        +PWT  QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+G +P P
Subjt:  TPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
AT1G75250.2 RAD-like 61.2e-2271.43Show/hide
Query:  TPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
        +PWT  QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+G +P P
Subjt:  TPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
AT2G21650.1 Homeodomain-like superfamily protein7.3e-2363.16Show/hide
Query:  SMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
        SM+++G S  WT KQNKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE KR Y LLV D++ IE+G +PFP  + T
Subjt:  SMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT
AT4G39250.1 RAD-like 11.9e-2364.94Show/hide
Query:  MASMTAHGPST-PWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRR
        MAS +    S+  WTAKQNKAFE+ALA YD+DTP RW NVAK +GGKT EEVKRHY+LLV+D+  IE+G +PFP  R
Subjt:  MASMTAHGPST-PWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATGACTGCTCATGGACCAAGCACTCCATGGACTGCAAAGCAAAACAAAGCATTTGAGAAAGCTTTGGCAGTTTATGATAAAGACACACCTGAAAGATGGCT
GAATGTTGCGAAGGCCATTGGTGGGAAAACTGAAGAAGAAGTGAAAAGGCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAATCTGGTGAAATTCCTTTTCCTT
ATCGAAGATTAACGTGA
mRNA sequenceShow/hide mRNA sequence
ATACTTTTCACCTTGCAAAATAAGACTTTTTTAGTCCTTTCTGTTTTCTCCCACTCTTTAATTATTTTTAACTTTTTTTCCCCTCACTTCAAACCCTTTGAAGGATTCCT
TTTTATTTTGTCGAATGGCTTCCATGACTGCTCATGGACCAAGCACTCCATGGACTGCAAAGCAAAACAAAGCATTTGAGAAAGCTTTGGCAGTTTATGATAAAGACACA
CCTGAAAGATGGCTGAATGTTGCGAAGGCCATTGGTGGGAAAACTGAAGAAGAAGTGAAAAGGCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAATCTGGTGA
AATTCCTTTTCCTTATCGAAGATTAACGTGATCAAGTAATTAAGTGTTAATGAAACAAGGATGATTAAGTGAGCCAGCTCCTTCAGTGGTTTGAAGAATAGAAGAAGAAG
AAAACCATATTATGTTTGTCTTTTTGTGCCCATTTAAAGTGTAATTGTAATTTTTTGAATGGAATAAAGGATTATTTGCTTGCTGTTAATTTCCTTCTAATCAGAACCAT
CCATCTTCCGTTTTTTTTTTCTCGTTTTTACTTAAATTTAACATTTGTGTGCTGATT
Protein sequenceShow/hide protein sequence
MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRRLT