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IVF0011026 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011026
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionNuclear transcription factor Y subunit C
Genome locationchr03:21747751..21748173
RNA-Seq ExpressionIVF0011026
SyntenyIVF0011026
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064731.1 dr1-associated corepressor [Cucumis melo var. makuwa]5.61e-90100Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

XP_004144200.1 DNA polymerase epsilon subunit C [Cucumis sativus]6.55e-8294.89Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAE AAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAET
        AKDENR RAVVDKVAP GTRRIDDFFRR TKT SAET
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAET

XP_008445504.1 PREDICTED: dr1-associated corepressor [Cucumis melo]1.88e-8898.57Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDA 
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

XP_022997291.1 DNA polymerase epsilon subunit C [Cucurbita maxima]7.91e-8190Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALF+VSCATELFL+LLAEKSAEVAAEKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENR R VVDKVAP GTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

XP_038884228.1 NCT transcriptional regulatory complex subunit A [Benincasa hispida]1.94e-8191.43Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        M EEESG+AIRPEFPTGRVKKIMKLDKDI KVNSEALF+VSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLP QPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENR R VVDKV P GTRRIDDFFRRP KTTSAE NES
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

TrEMBL top hitse value%identityAlignment
A0A0A0KGV1 CBFD_NFYB_HMF domain-containing protein1.9e-6194.89Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAE AAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAET
        AKDENR RAVVDKVAP GTRRIDDFFRR TKT SAET
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAET

A0A1S3BDL4 dr1-associated corepressor2.6e-6698.57Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDA 
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

A0A5A7VG98 Dr1-associated corepressor1.8e-67100Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

A0A6J1HCT3 DNA polymerase epsilon subunit C1.0e-5988.57Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALF+VSCATELFL+LLAEKS+EVAAEKKRKTVKLEHIR+AVKRH+SI DFLLDSLPLPSQPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENR R VVDKVAP GTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

A0A6J1K737 DNA polymerase epsilon subunit C1.6e-6090Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALF+VSCATELFL+LLAEKSAEVAAEKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENR R VVDKVAP GTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

SwissProt top hitse value%identityAlignment
B0XTT5 NCT transcriptional regulatory complex subunit A8.9e-0835.05Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDAPAKDEN
        ++ +FP  R+K+IM+ D+D+GKV       VS A ELF+  L  K+A+ A ++  K V   H++ AV +   + DFL D +  +P QP+     D++
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDAPAKDEN

Q14919 Dr1-associated corepressor9.9e-0738.67Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLD
        FP  R+KKIM+ D++IGKV +    I+S A ELFL+ L +K+ +V   +  KT+   H++  ++  +   DFL D
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLD

Q2YDP3 Dr1-associated corepressor9.9e-0738.67Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLD
        FP  R+KKIM+ D++IGKV +    I+S A ELFL+ L +K+ +V   +  KT+   H++  ++  +   DFL D
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLD

Q4X095 NCT transcriptional regulatory complex subunit A8.9e-0835.05Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDAPAKDEN
        ++ +FP  R+K+IM+ D+D+GKV       VS A ELF+  L  K+A+ A ++  K V   H++ AV +   + DFL D +  +P QP+     D++
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDAPAKDEN

Q9W256 DNA polymerase epsilon subunit 45.8e-0740.58Show/hide
Query:  EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAV
        EA   + P  R++ IMKLD D+   N+EA+FIV+ A ELF+  L+ +S    A+ K+KT++   + MA+
Subjt:  EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAV

Arabidopsis top hitse value%identityAlignment
AT1G07980.1 nuclear factor Y, subunit C105.9e-0729.67Show/hide
Query:  EEEESG-EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLP
        EE++ G E  + +FP  R+++IM+ D    ++  +A+F+V+ ATE+F++  +E++ + + + K+K +  +H+   V   +   +FL DS+P
Subjt:  EEEESG-EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLP

AT3G12480.1 nuclear factor Y, subunit C114.1e-0839.73Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFL
        FP  R+KKIM+ D+D+GK+      +VS + ELFL+ L +++ E+  E+  KTV   H++  V+R+ ++ DFL
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFL

AT5G19490.1 Histone superfamily protein5.9e-0731.43Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDEN--RI
        ++  FP  R+KKIM+ D+++GK+      +VS A ELFL+ L   + +V   +  KTV   H++  V+   ++ DFL D++        +  +D++  + 
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDEN--RI

Query:  RAVVD
        R VVD
Subjt:  RAVVD

AT5G27910.1 nuclear factor Y, subunit C85.0e-0635.85Show/hide
Query:  EFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRIRAVVD
        + P  R+KKIMK D D+  + SEA  ++S A E+F+  L  +S   A E KR T++  ++  AV +   I DFLLD      + S A A D   +  + D
Subjt:  EFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRIRAVVD

Query:  KVAPAG
           P G
Subjt:  KVAPAG

AT5G43250.1 nuclear factor Y, subunit C139.4e-3764.03Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEE   +IRPEFP GRVKKIMKLDKDI K+NSEAL +++ +TELFL  LAEKSA V AEKKRKTV L+H+R+AVKRH+  SDFLLDSLPLP+QP    
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRIRAVVDKVAPA---GTRRIDDFFRR-PTKTTSA
               ++V DK  PA   GTRRIDDFF +   KT SA
Subjt:  AKDENRIRAVVDKVAPA---GTRRIDDFFRR-PTKTTSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAAGAGGAATCCGGCGAGGCTATCCGGCCAGAATTTCCAACGGGCCGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGGCAAAGTGAATTCAGAAGCCTT
GTTTATAGTCTCATGCGCCACAGAACTCTTCCTTAAGCTCCTAGCTGAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAA
TGGCCGTCAAAAGGCATCGCTCGATCAGTGATTTTCTTCTCGATTCACTTCCTCTTCCGTCTCAGCCGTCGGATGCGCCGGCGAAGGACGAGAATCGCATTCGCGCTGTC
GTTGACAAAGTGGCTCCTGCAGGAACGCGTCGCATCGATGATTTCTTTCGTCGGCCAACTAAGACAACGTCGGCGGAGACCAACGAGTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAAGAGGAATCCGGCGAGGCTATCCGGCCAGAATTTCCAACGGGCCGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGGCAAAGTGAATTCAGAAGCCTT
GTTTATAGTCTCATGCGCCACAGAACTCTTCCTTAAGCTCCTAGCTGAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAA
TGGCCGTCAAAAGGCATCGCTCGATCAGTGATTTTCTTCTCGATTCACTTCCTCTTCCGTCTCAGCCGTCGGATGCGCCGGCGAAGGACGAGAATCGCATTCGCGCTGTC
GTTGACAAAGTGGCTCCTGCAGGAACGCGTCGCATCGATGATTTCTTTCGTCGGCCAACTAAGACAACGTCGGCGGAGACCAACGAGTCATAG
Protein sequenceShow/hide protein sequence
MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRIRAV
VDKVAPAGTRRIDDFFRRPTKTTSAETNES