CuGenDBv2

Gene ID	IVF0011032
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related pol polyprotein from transposon tnt 1-94
Genome location	chr02:12601459..12602124
RNA-Seq Expression	IVF0011032
Synteny	IVF0011032
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0015074 - DNA integration (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031317.1 uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa]

1.55e-60

97.35

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

KAA0039507.1 hypothetical protein E6C27_scaffold64G003290 [Cucumis melo var. makuwa]

3.50e-60

96.4

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEK RPKRQ KPSKKVLENVKEQKN+RGKKNDSPKPTRHSPRIK
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK

Query:  DLAPSFDLQIS
        DLAPSFDLQIS
Subjt:  DLAPSFDLQIS

KAA0065297.1 hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa]

1.38e-62

97.35

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPT+HSPRI+
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

TYK15261.1 hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa]

3.94e-62

97.35

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

TYK22453.1 uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa]

1.55e-60

97.35

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TDE0 Uncharacterized protein

2.4e-46

96.4

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEK RPKRQ KPSKKVLENVKEQKN+RGKKNDSPKPTRHSPRIK
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK

Query:  DLAPSFDLQIS
        DLAPSFDLQIS
Subjt:  DLAPSFDLQIS

A0A5A7VDY1 Uncharacterized protein

3.3e-48

97.35

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPT+HSPRI+
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

A0A5A7VIA9 Uncharacterized protein

7.4e-48

97.35

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

A0A5D3CTS8 Uncharacterized protein

7.4e-48

97.35

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

A0A5D3DFX6 Uncharacterized protein

7.4e-48

97.35

Show/hide

Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIK

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATTGATGCTGATGTTGATAAAGAGAAAGAGATTGAAGATAATGAGGAAACCGAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGGTGCATGACACATCAAA
CAAAGTGAAGGTTGTTCAAGAAAAGGCAAAAATGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGG
AGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTAGAATAAAGGATCTAGCACCTAGTTTTGATTTGCAAATC
TCTCAATTATAA

mRNA sequence

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Protein sequence

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MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQI
SQL

IVF0011032 (gene) of Melon (IVF77) v1 genome