CuGenDBv2

Gene ID	IVF0011060
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Genome location	chr04:22196204..22196446
RNA-Seq Expression	IVF0011060
Synteny	IVF0011060
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0016772 - transferase activity, transferring phosphorus-containing groups (molecular function) GO:0097159 - organic cyclic compound binding (molecular function) GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domains	IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KYP30887.1 Retrovirus-related Pol polyprotein from transposon 17.6, partial [Cajanus cajan]

7.05e-28

65.82

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Query:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG
        MPFGLCNAPGTFQRCMMSIF+D +E CIEVFMDD +VY                   ETNLVLNYEKCHFMV HG VLG
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG

KYP49023.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan]

4.14e-28

65.82

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Query:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG
        MPFGLCNAPGTFQRCM+SIFS+F+E CIEVFMDD TVY                   ETNLVLN+EKCHFMV  GIVLG
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG

KYP71307.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan]

3.38e-28

65.82

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Query:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG
        MPFGLCNAPGTFQRCM+SIFSD++E CIEVFMDD T+Y                   ETNLVLN+EKCHFMV HGIVLG
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG

KYP78693.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan]

5.49e-29

65.82

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Query:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG
        MPFGLCNAPGTFQRCM+SIFSDF+E CIEVFMDD T+Y                   ETNLVLN+EKCHFMV  GIVLG
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG

RYA56915.1 hypothetical protein DD596_25350, partial [Enterobacter cloacae complex sp. 4DZ3-28B]

6.65e-28

67.09

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Query:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG
        MPFGLCNAPGTFQRCM+SIFSDF+E CIEVFMDD TVY                   ETNLVLN+EKCHFMV  GIVLG
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG

TrEMBL top hits

e value

%identity

Alignment

A0A151T1R1 Retrovirus-related Pol polyprotein from transposon 17.6

1.6e-20

67.09

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Query:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG
        MPFGLCNAPGTFQRCM+SIFSDF+E CIEVFMDD TVY                   ETNLVLN+EKCHFMV  GIVLG
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG

A0A151TW73 Retrovirus-related Pol polyprotein from transposon 17.6

5.4e-21

65.82

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Query:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG
        MPFGLCNAPGTFQRCM+SIFSD++E CIEVFMDD T+Y                   ETNLVLN+EKCHFMV HGIVLG
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG

A0A2I0ICA2 Uncharacterized protein

9.3e-21

67.09

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Query:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG
        MPFGLC+APGTFQRCMMSIFSD IE CIEVFMDD TVY                   E+NLVLNYEKCHFMV+HGI+LG
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG

A0A392P218 Reverse transcriptase domain-containing protein (Fragment)

9.3e-21

68.35

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Query:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG
        MPFGLCNAPGTFQRCM+SIFSDFIE C+EVFMDD TVY                   ETNLVLNYEKCHFMV  GIVLG
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG

A0A6P8DCT8 Reverse transcriptase

7.1e-21

68.35

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Query:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG
        MPFGLC+APGTFQRCMMSIFSD IE CIEVFMDD TVY                   E+NLVLNYEKCHFMV+HGIVLG
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETNLVLNYEKCHFMVSHGIVLG

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

1.1e-05

36.71

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Query:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVYET-------------------NLVLNYEKCHFMVSHGIVLG
        MPFGL NAP TFQRCM  I    + K   V++DD  V+ T                   NL L  +KC F+      LG
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVYET-------------------NLVLNYEKCHFMVSHGIVLG

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.1e-05

35.44

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Query:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVYET-------------------NLVLNYEKCHFMVSHGIVLG
        MPFGL NAP TFQRCM +I    + K   V++DD  ++ T                   NL L  +KC F+      LG
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVYET-------------------NLVLNYEKCHFMVSHGIVLG

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACGTTGCATGATGAGCATATTTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTCCACAGT
TTATGAAACTAACCTTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTCTCATGGTATAGTTTTAGGATGTTAG

mRNA sequence

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ATGCCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACGTTGCATGATGAGCATATTTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTCCACAGT
TTATGAAACTAACCTTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTCTCATGGTATAGTTTTAGGATGTTAG

Protein sequence

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MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVYETNLVLNYEKCHFMVSHGIVLGC

IVF0011060 (gene) of Melon (IVF77) v1 genome