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IVF0011070 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011070
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Genome locationchr06:5718311..5734936
RNA-Seq ExpressionIVF0011070
SyntenyIVF0011070
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047409.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa]6.87e-1166.07Show/hide
Query:  QDTYSEHFTLDSWHRPSPVFSKYRSGRELIGGRTKVQPKTIEKMANVLPMSGERSS
        Q++YSE F+L SW+ PS V  KY S  EL GGRTKVQP  IEKM N L MSGERSS
Subjt:  QDTYSEHFTLDSWHRPSPVFSKYRSGRELIGGRTKVQPKTIEKMANVLPMSGERSS

KAA0051945.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]6.95e-2355.56Show/hide
Query:  MHFNEENGLNSRNSSVRPMKVRARMPRTKFFFRGNARTLFFYRGVKNGPSTVSLFYVGHKRFELQDTYSEHFTLDSWHRPSPVFSKYRSGRELIGGRTK
        M FNE NGL+S  S V P K++ RMP TKF           Y   K+GPSTV LF +GHK FEL D+Y E+F L SWH PS ++SKYRSG EL GGR K
Subjt:  MHFNEENGLNSRNSSVRPMKVRARMPRTKFFFRGNARTLFFYRGVKNGPSTVSLFYVGHKRFELQDTYSEHFTLDSWHRPSPVFSKYRSGRELIGGRTK

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]7.17e-1336.02Show/hide
Query:  LPTSGERSSGCQKPLKMHFNEENGLNSRNSSVRPMKVRARM-----------------------------------PRTKFFFRGNARTLFFYRGVK---
        LP+ G  +S     L    +E NGL+ R SSV   KVR RM                                   PRT  +  G  R       V+   
Subjt:  LPTSGERSSGCQKPLKMHFNEENGLNSRNSSVRPMKVRARM-----------------------------------PRTKFFFRGNARTLFFYRGVK---

Query:  ---------NGPSTVSLFYVGHKRFELQDTYSEHFTLDSWHRPSPVFSKYRSGRELIGGRTKVQPKTIEKMANVLPMSGERSSGVK
                 NG S+ +       RFELQD+ S+ F+L S HRPS VF+KYRSG EL+  RTKVQ   IEKMAN L MSG  S G +
Subjt:  ---------NGPSTVSLFYVGHKRFELQDTYSEHFTLDSWHRPSPVFSKYRSGRELIGGRTKVQPKTIEKMANVLPMSGERSSGVK

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]4.56e-2353.1Show/hide
Query:  NARTLFFYRGVKNGPSTVSLFYVGHKRFELQDTY---------------------------SEHFTLDSWHRPSPVFSKYRSGRELIGGRTKVQPKTIEK
        NA   +FYR VK+ P+ V LF VGHKRFEL+D+Y                           SE+F+L  WHRPSPVF KYRS  E+I GRTKVQP+TIE 
Subjt:  NARTLFFYRGVKNGPSTVSLFYVGHKRFELQDTY---------------------------SEHFTLDSWHRPSPVFSKYRSGRELIGGRTKVQPKTIEK

Query:  MANVLPMSGERSS
        MAN LP SGERSS
Subjt:  MANVLPMSGERSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]3.71e-1167.35Show/hide
Query:  FTLDSWHRPSPVFSKYRSGRELIGGRTKVQPKTIEKMANVLPMSGERSS
        F+L  WH  SP+F +YRSG EL+G RTKVQ  TIEK+AN LP SGERSS
Subjt:  FTLDSWHRPSPVFSKYRSGRELIGGRTKVQPKTIEKMANVLPMSGERSS

TrEMBL top hitse value%identityAlignment
A0A5A7U1Q6 Retrotransposon protein, putative, Ty3-gypsy sub-class4.2e-0966.07Show/hide
Query:  QDTYSEHFTLDSWHRPSPVFSKYRSGRELIGGRTKVQPKTIEKMANVLPMSGERSS
        Q++YSE F+L SW+ PS V  KY S  EL GGRTKVQP  IEKM N L MSGERSS
Subjt:  QDTYSEHFTLDSWHRPSPVFSKYRSGRELIGGRTKVQPKTIEKMANVLPMSGERSS

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed2.4e-2046.85Show/hide
Query:  EENGLNSRNSSVRPMKVRARMPRTKFFFRGNARTLFFYRGVKNGPSTVSLFYVGHKRFELQDTY---------------------------SEHFTLDSW
        EE   N + S   PM V+            NA   +FYR VK+ P+ V LF VGHKRFEL+D+Y                           SE+F+L  W
Subjt:  EENGLNSRNSSVRPMKVRARMPRTKFFFRGNARTLFFYRGVKNGPSTVSLFYVGHKRFELQDTY---------------------------SEHFTLDSW

Query:  HRPSPVFSKYRSGRELIGGRTKVQPKTIEKMANVLPMSGERSS
        HRPSPVF KYRS  E+I GRTKVQP+TIE MAN LP SGERSS
Subjt:  HRPSPVFSKYRSGRELIGGRTKVQPKTIEKMANVLPMSGERSS

A0A5A7VGQ5 Uncharacterized protein2.1e-1335.71Show/hide
Query:  LPTSGERSSGCQKPLKMHFNEENGLNSRNSSVRPMKVRARMPRTKFFFRGNARTLFFYRGVKNGPSTVSLFYV---------------------------
        LP+ G  +S     L    +E NGL+ R SSV   KVR RM  T+          F +R VK+ P+TVSLF+V                           
Subjt:  LPTSGERSSGCQKPLKMHFNEENGLNSRNSSVRPMKVRARMPRTKFFFRGNARTLFFYRGVKNGPSTVSLFYV---------------------------

Query:  ------------------------------GHKRFELQDTYSEHFTLDSWHRPSPVFSKYRSGRELIGGRTKVQPKTIEKMANVLPMSGERSSGVK
                                         RFELQD+ S+ F+L S HRPS VF+KYRSG EL+  RTKVQ   IEKMAN L MSG  S G +
Subjt:  ------------------------------GHKRFELQDTYSEHFTLDSWHRPSPVFSKYRSGRELIGGRTKVQPKTIEKMANVLPMSGERSSGVK

A0A5D3BG85 Uncharacterized protein3.2e-0967.35Show/hide
Query:  FTLDSWHRPSPVFSKYRSGRELIGGRTKVQPKTIEKMANVLPMSGERSS
        F+L  WH  SP+F +YRSG EL+G RTKVQ  TIEK+AN LP SGERSS
Subjt:  FTLDSWHRPSPVFSKYRSGRELIGGRTKVQPKTIEKMANVLPMSGERSS

A0A5D3CKZ2 Pentatricopeptide repeat-containing protein4.9e-1855.56Show/hide
Query:  MHFNEENGLNSRNSSVRPMKVRARMPRTKFFFRGNARTLFFYRGVKNGPSTVSLFYVGHKRFELQDTYSEHFTLDSWHRPSPVFSKYRSGRELIGGRTK
        M FNE NGL+S  S V P K++ RMP TK          F Y   K+GPSTV LF +GHK FEL D+Y E+F L SWH PS ++SKYRSG EL GGR K
Subjt:  MHFNEENGLNSRNSSVRPMKVRARMPRTKFFFRGNARTLFFYRGVKNGPSTVSLFYVGHKRFELQDTYSEHFTLDSWHRPSPVFSKYRSGRELIGGRTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAATGCTCTTCCAACAAGTGGCGAACGCTCGTCTGGTTGTCAGAAACCACTGAAAATGCATTTTAATGAAGAAAACGGGCTAAACTCAAGAAATTCTAGTGTTCG
TCCCATGAAAGTGCGAGCAAGAATGCCCCGAACTAAGTTTTTCTTTCGCGGTAATGCTCGAACTCTATTTTTCTATCGCGGGGTAAAAAACGGTCCTTCAACGGTTTCTT
TGTTTTATGTTGGACATAAGCGCTTTGAGCTTCAAGACACATACTCCGAGCACTTCACTCTAGATTCCTGGCATCGTCCCTCGCCCGTTTTCTCAAAGTATAGGTCGGGA
AGAGAGCTCATTGGAGGGAGAACTAAGGTGCAACCCAAAACAATCGAAAAGATGGCTAACGTACTTCCCATGAGTGGCGAACGCTCATCTGGTGTCAAAAACCACAAAAA
ATGCATTTCAGCAAAGGAAACAAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAATGCTCTTCCAACAAGTGGCGAACGCTCGTCTGGTTGTCAGAAACCACTGAAAATGCATTTTAATGAAGAAAACGGGCTAAACTCAAGAAATTCTAGTGTTCG
TCCCATGAAAGTGCGAGCAAGAATGCCCCGAACTAAGTTTTTCTTTCGCGGTAATGCTCGAACTCTATTTTTCTATCGCGGGGTAAAAAACGGTCCTTCAACGGTTTCTT
TGTTTTATGTTGGACATAAGCGCTTTGAGCTTCAAGACACATACTCCGAGCACTTCACTCTAGATTCCTGGCATCGTCCCTCGCCCGTTTTCTCAAAGTATAGGTCGGGA
AGAGAGCTCATTGGAGGGAGAACTAAGGTGCAACCCAAAACAATCGAAAAGATGGCTAACGTACTTCCCATGAGTGGCGAACGCTCATCTGGTGTCAAAAACCACAAAAA
ATGCATTTCAGCAAAGGAAACAAGCTAA
Protein sequenceShow/hide protein sequence
MANALPTSGERSSGCQKPLKMHFNEENGLNSRNSSVRPMKVRARMPRTKFFFRGNARTLFFYRGVKNGPSTVSLFYVGHKRFELQDTYSEHFTLDSWHRPSPVFSKYRSG
RELIGGRTKVQPKTIEKMANVLPMSGERSSGVKNHKKCISAKETS