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IVF0011104 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011104
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchr04:13516081..13516389
RNA-Seq ExpressionIVF0011104
SyntenyIVF0011104
Gene Ontology termsGO:0010073 - meristem maintenance (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037866.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]8.39e-1247.12Show/hide
Query:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL--RPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRA
        MM+  F T YYDLGVGQSSDF   YYNS+AG SS++FGQ+YYDL   P          G    N    Y        Q ++     + IRR YNNKE R 
Subjt:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL--RPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRA

Query:  DDDN
        DDDN
Subjt:  DDDN

KAA0038072.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]7.59e-60100Show/hide
Query:  YYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDLRPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN
        YYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDLRPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN
Subjt:  YYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDLRPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN

KAA0050408.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.49e-1381.82Show/hide
Query:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL
        MM+SAF T YYDLGVGQSSDF TGYYNS+A  SSSNFGQ+YYDL
Subjt:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL

KAA0062959.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa]1.46e-1175Show/hide
Query:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL
        MM+SAF T YYD  VGQSSDF T YYNS+AG SSSNF Q+YYDL
Subjt:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL

TYK09816.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]5.51e-1247.12Show/hide
Query:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL--RPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRA
        MM+  F T YYDLGVGQSSDF   YYNS+AG SS++FGQ+YYDL   P          G    N    Y        Q ++     + IRR YNNKE R 
Subjt:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL--RPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRA

Query:  DDDN
        DDDN
Subjt:  DDDN

TrEMBL top hitse value%identityAlignment
A0A5A7T3K7 Mediator of RNA polymerase II transcription subunit 12-like isoform X11.5e-44100Show/hide
Query:  YYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDLRPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN
        YYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDLRPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN
Subjt:  YYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDLRPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN

A0A5A7T6Q6 Mediator of RNA polymerase II transcription subunit 12-like isoform X16.1e-0947.12Show/hide
Query:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL--RPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRA
        MM+  F T YYDLGVGQSSDF   YYNS+AG SS++FGQ+YYDL   P          G    N    Y        Q ++     + IRR YNNKE R 
Subjt:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL--RPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRA

Query:  DDDN
        DDDN
Subjt:  DDDN

A0A5A7U558 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.5e-1081.82Show/hide
Query:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL
        MM+SAF T YYDLGVGQSSDF TGYYNS+A  SSSNFGQ+YYDL
Subjt:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL

A0A5D3CHF6 Mediator of RNA polymerase II transcription subunit 12-like isoform X16.1e-0947.12Show/hide
Query:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL--RPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRA
        MM+  F T YYDLGVGQSSDF   YYNS+AG SS++FGQ+YYDL   P          G    N    Y        Q ++     + IRR YNNKE R 
Subjt:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL--RPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRA

Query:  DDDN
        DDDN
Subjt:  DDDN

A0A5D3CT32 Mediator of RNA polymerase II transcription subunit 12-like isoform X13.0e-0872.73Show/hide
Query:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL
        MM+  F T YYD  VGQSSDFE GYYNS+AG SS+NFGQ+YYDL
Subjt:  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATATCGGCATTTGAAACAGGATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTCGAGACAGGATATTACAATTCAGATGCAGGTTCATCATCATCAAACTT
TGGGCAAGAATACTATGATTTAAGGCCAATCCATCATCTTCATACATGCGTGGTCACGGGTGCTGTCGTGGAGAACGTAACGAATATTTATAGTACGAAGTGCCTGCAGC
AGTACCAGAGGAACCAGATGAGCAACAACAACAAAAGAATTAGAAGGAACTACAACAACAAAGAATGCAGAGCCGATGACGACAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGATATCGGCATTTGAAACAGGATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTCGAGACAGGATATTACAATTCAGATGCAGGTTCATCATCATCAAACTT
TGGGCAAGAATACTATGATTTAAGGCCAATCCATCATCTTCATACATGCGTGGTCACGGGTGCTGTCGTGGAGAACGTAACGAATATTTATAGTACGAAGTGCCTGCAGC
AGTACCAGAGGAACCAGATGAGCAACAACAACAAAAGAATTAGAAGGAACTACAACAACAAAGAATGCAGAGCCGATGACGACAACTAG
Protein sequenceShow/hide protein sequence
MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDLRPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN