CuGenDBv2

Gene ID	IVF0011112
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	60s ribosomal protein l2
Genome location	chr04:15955619..15955843
RNA-Seq Expression	IVF0011112
Synteny	IVF0011112
Gene Ontology terms	GO:0032543 - mitochondrial translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031822.1 60s ribosomal protein l2 [Cucumis melo var. makuwa]

1.28e-31

75.68

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Query:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD
        MTIERFSLSIPSHTGR+VKWQGHM VWL  EYS H NK+LIGEWGK  +A  EREGL   M MGAG FEKA AD
Subjt:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD

KAA0032895.1 60s ribosomal protein l2 [Cucumis melo var. makuwa]

3.02e-35

81.08

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Query:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD
        +TIERFSLSIPSHTGR+VKWQGH PVWL+AEYS H NK+LIGE GK  +  AEREGLPG MPMGAGFFEKARAD
Subjt:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD

KAA0051145.1 ribosomal protein L2 [Cucumis melo var. makuwa]

1.70e-48

100

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Query:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD
        MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD
Subjt:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD

THU42354.1 hypothetical protein C4D60_Mb00t00470 [Musa balbisiana]

4.11e-15

56.76

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Query:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD
        +TI+R SLSIPSHTGR++                  +K+LIGE G   EA AEREGLPG M MGAGFFEKARAD
Subjt:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD

XP_030519441.1 LOW QUALITY PROTEIN: uncharacterized protein LOC115732897, partial [Rhodamnia argentea]

7.79e-18

63.38

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Query:  RFSLSIPSHTGRKVKWQGHMPVWLIAEYSL-HLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD
        + SLSIPSHTGR+VKWQG       +  S+ H+  +L GE G   EA AEREGLPG MPMGAGFFEKARAD
Subjt:  RFSLSIPSHTGRKVKWQGHMPVWLIAEYSL-HLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD

TrEMBL top hits

e value

%identity

Alignment

A0A1J6J9A5 60s ribosomal protein l2, mitochondrial

2.5e-12

58.11

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Query:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD
        +TIER SLSIPSHTG+++                  +K+LIGE G   EA AEREGLPG MPMGAGFFEKARAD
Subjt:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD

A0A1J6KG38 60s ribosomal protein l2, mitochondrial

7.3e-12

56.76

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Query:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD
        +TIER SLSIPSHTG+++                  +K+LIGE G   EA AEREGLPG +PMGAGFFEKARAD
Subjt:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD

A0A5A7SUL2 60s ribosomal protein l2

2.1e-27

81.08

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Query:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD
        +TIERFSLSIPSHTGR+VKWQGH PVWL+AEYS H NK+LIGE GK  +  AEREGLPG MPMGAGFFEKARAD
Subjt:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD

A0A5D3BBV8 60s ribosomal protein l2

8.3e-24

75.68

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Query:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD
        MTIERFSLSIPSHTGR+VKWQGHM VWL  EYS H NK+LIGEWGK  +A  EREGL   M MGAG FEKA AD
Subjt:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD

A0A5D3BXG0 Ribosomal protein L2 (Mitochondrion)

6.6e-37

100

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Query:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD
        MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD
Subjt:  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G07715.1 Nucleic acid-binding, OB-fold-like protein

5.2e-10

82.86

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Query:  LIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD
        LIGE G T EA  EREGLPG MPMGAGFFEKARAD
Subjt:  LIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD

Sequences

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CDS sequence

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ATGACAATTGAGAGGTTCTCACTGAGCATTCCTAGTCACACGGGAAGAAAGGTCAAATGGCAAGGTCATATGCCCGTTTGGCTCATCGCGGAGTATAGCTTACATCTAAA
CAAAAATCTTATTGGGGAATGGGGTAAGACACGTGAAGCTCTGGCAGAAAGGGAGGGCCTGCCAGGCTATATGCCCATGGGTGCTGGATTCTTCGAAAAAGCGCGGGCTG
ACTAA

mRNA sequence

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Protein sequence

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MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYMPMGAGFFEKARAD

IVF0011112 (gene) of Melon (IVF77) v1 genome