CuGenDBv2

Gene ID	IVF0011125
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Cytochrome c biogenesis B
Genome location	tig00007088:307297..307917
RNA-Seq Expression	IVF0011125
Synteny	IVF0011125
Gene Ontology terms	GO:0015886 - heme transport (biological process) GO:0017004 - cytochrome complex assembly (biological process) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0015232 - heme transporter activity (molecular function)
InterPro domains	IPR003544 - Cytochrome c-type biogenesis protein CcmB

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AEN56106.1 cytochrome c biogenesis B [Cucumis melo subsp. melo]

1.98e-147

100

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
Subjt:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SLSLQD
        SLSLQD
Subjt:  SLSLQD

QXE45588.1 cytochrome c biogenesis B [Prosopis glandulosa]

1.68e-139

94.66

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHK+IFPSTPITSFSPFLSYIVVTPL+LGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SC+FCGFPM +LPYQFGRSGMDRLNILLGSLVLTLLCGIHSR ALGITSS GWNSSQNPTTSPTSLPPT+SRTSIETEWFHV SSIGYSSPFVSLFPISV
Subjt:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SLSLQD
        S+SLQD
Subjt:  SLSLQD

YP_004849329.1 cytochrome c biogenesis B [Cucumis sativus]

3.16e-144

98.06

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQL+GH VIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SCLFCGFPM KLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
Subjt:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SLSLQD
        SLSLQD
Subjt:  SLSLQD

YP_009498132.1 cytochrome c biogenesis B [Senna tora]

1.96e-138

94.17

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHK+IFPSTPITSFSPFLSYIVVTPL+LGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SC+FCGFPM +LPYQFGRSGMDRLNI LGSLVLTLLCGIHSR ALGITSS GWNSSQNPTTSPTSLPPT+SRTSIETEWFHV SSIGYSSPFVSLFPISV
Subjt:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SLSLQD
        S+SLQD
Subjt:  SLSLQD

YP_009913630.1 cytochrome c biogenesis B [Luffa acutangula]

2.70e-145

98.06

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SC+FCGFPM KLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPT+SRTSIETEWFHVPSSIGYSSPFVSLFPISV
Subjt:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SLSLQD
        S+SLQD
Subjt:  SLSLQD

TrEMBL top hits

e value

%identity

Alignment

A0A3Q9CS08 Cytochrome c biogenesis B

1.4e-113

100

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
Subjt:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SLSLQD
        SLSLQD
Subjt:  SLSLQD

A0A3S5HWV9 Cytochrome c biogenesis B

9.8e-107

94.17

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHK+IFPSTPITSFSPFLSYIVVTPL+LGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SC+FCGFPM +LPYQFGRSGMDRLNI LGSLVLTLLCGIHSR ALGITSS GWNSSQNPTTSPTSLPPT+SRTSIETEWFHV SSIGYSSPFVSLFPISV
Subjt:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SLSLQD
        S+SLQD
Subjt:  SLSLQD

A0A7D6C7C3 Cytochrome c biogenesis B

5.9e-112

98.06

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SC+FCGFPM KLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPT+SRTSIETEWFHVPSSIGYSSPFVSLFPISV
Subjt:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SLSLQD
        S+SLQD
Subjt:  SLSLQD

G3EIY1 Cytochrome c biogenesis B

3.8e-111

98.06

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQL+GH VIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SCLFCGFPM KLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
Subjt:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SLSLQD
        SLSLQD
Subjt:  SLSLQD

G3EU22 Cytochrome c biogenesis B

1.4e-113

100

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
Subjt:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SLSLQD
        SLSLQD
Subjt:  SLSLQD

SwissProt top hits

e value

%identity

Alignment

P38454 Putative cytochrome c biogenesis ccmB-like mitochondrial protein

6.4e-55

58.54

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Query:  RLFLSLYHKRIF--PSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        ++FL L+++ I    ST IT+FS FL YIVVTPLM+GF KDF CH HLG I I  LF F P  F +N+ EDGTLELYYLS YCL KILL +L GH V+QI
Subjt:  RLFLSLYHKRIF--PSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        S +FC FP+ +L YQF +S M+   I++GS + TL+CGIHS  ALGITS+ GWNS QN TT PT LP  +  TSIETEWFHV   +GY   F+  +PI V
Subjt:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SLSLQ
        S++LQ
Subjt:  SLSLQ

P93280 Putative cytochrome c biogenesis ccmB-like mitochondrial protein

1.4e-81

79.61

Show/hide

Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLF  LY+K IF STPITSFS FL YIVVTPLMLGFEKDF CH HLG I I  LF F  A F RNEKEDGTLELYYLS YCLPKILLLQLVGH VIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SC+FCGFPM +L YQFGRSGMD LNILLGSLVLTLLCGIHS  ALGITSS GWNSSQN TT PT LP T+  TSIETEWFHV   IGY   FVSLFPISV
Subjt:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SLSLQD
        S+SLQD
Subjt:  SLSLQD

Arabidopsis top hits

e value

%identity

Alignment

ATMG00110.1 cytochrome C biogenesis 206

1.3e-103

91.26

Show/hide

Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHK IF STPITSFS FLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLS YCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        S +FCGFPM +L YQFGRSGMDRLNI LGSLVLTLLCGIHSRSALGITSS GWNSSQNPTTSPT LP T+SRTSIETEWFHV SSIGYSS FVSLFPISV
Subjt:  SCLFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SLSLQD
        S+SLQD
Subjt:  SLSLQD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGACGACTCTTTCTTTCACTATATCATAAACGGATCTTCCCCTCCACACCAATCACGAGTTTTTCTCCATTCCTCTCGTATATCGTCGTCACGCCCTTAATGCTAGG
TTTTGAAAAAGACTTTTCATGTCATTCCCATTTAGGTCCGATTCGGATCCCTCCGTTGTTTCCTTTTCCTCCCGCACCTTTTCCTCGAAATGAGAAAGAAGATGGTACAC
TCGAATTGTATTATTTAAGTGCTTATTGCTTGCCAAAGATCCTACTTCTACAATTGGTAGGTCACCGGGTTATTCAAATAAGTTGTCTTTTCTGTGGTTTTCCCATGTTC
AAACTTCCGTACCAATTCGGTCGATCCGGAATGGATCGGTTAAACATTCTATTAGGGAGCCTGGTCTTGACTCTTCTGTGTGGTATTCATTCTCGTTCGGCTCTTGGAAT
CACATCCAGCCGTGGTTGGAACAGCTCGCAAAATCCAACCACTTCACCTACTTCATTGCCCCCAACCCTTTCTCGTACCTCTATTGAAACAGAATGGTTTCATGTTCCTT
CATCGATTGGTTATTCCTCCCCGTTCGTATCTCTTTTTCCAATTTCGGTCTCTCTGAGTTTACAAGATTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQISCLFCGFPMF
KLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISVSLSLQD

IVF0011125 (gene) of Melon (IVF77) v1 genome