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IVF0011131 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011131
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSerine hydroxymethyltransferase
Genome locationchr07:18640287..18640625
RNA-Seq ExpressionIVF0011131
SyntenyIVF0011131
Gene Ontology termsGO:0006565 - L-serine catabolic process (biological process)
GO:0019264 - glycine biosynthetic process from serine (biological process)
GO:0032259 - methylation (biological process)
GO:0035999 - tetrahydrofolate interconversion (biological process)
GO:0046655 - folic acid metabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0004372 - glycine hydroxymethyltransferase activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0030170 - pyridoxal phosphate binding (molecular function)
GO:0070905 - serine binding (molecular function)
InterPro domainsIPR001085 - Serine hydroxymethyltransferase
IPR015422 - Pyridoxal phosphate-dependent transferase, small domain
IPR015424 - Pyridoxal phosphate-dependent transferase
IPR039429 - Serine hydroxymethyltransferase-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062919.1 serine hydroxymethyltransferase 3 [Cucumis melo var. makuwa]2.17e-5698.9Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
        GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKL+EFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL

KAG7031099.1 Serine hydroxymethyltransferase 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]6.55e-4687.91Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
        GDKSALV GGIRIGSPAMTTRGFTE+EF AVA+FIHEGVKIT DAKPL PG KLQEFLKFV T DFPLIDRVSDLRS V+ALTTQFPIPGL
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL

TYK16423.1 serine hydroxymethyltransferase 3 [Cucumis melo var. makuwa]3.47e-57100Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
        GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL

XP_008451853.1 PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Cucumis melo]7.97e-4689.01Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
        GDKSALV GGIRIGSPAMTTRGFTE+EFAAVA+FIHEGVKIT DAKPL PG KLQEFLKFVTT DFPL DRVSDLRS V+ALTTQFPIPGL
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL

XP_022985017.1 serine hydroxymethyltransferase 3, chloroplastic-like [Cucurbita maxima]7.97e-4689.01Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
        GDKSALV GGIRIGSPAMTTRGFTE+EF AVA+FIHEGVKIT DAKPL PG KLQEFLKFVTT DFPLIDRVSDLRS V+ALTTQFPIPGL
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL

TrEMBL top hitse value%identityAlignment
A0A5A7V8Z1 Serine hydroxymethyltransferase3.4e-3789.01Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
        GDKSALV GGIRIGSPAMTTRGFTE+EFAAVA+FIHEGVKIT DAKPL PG KLQEFLKFVTT DFPL DRVSDLRS V+ALTTQFPIPGL
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL

A0A5A7VBD7 Glycine hydroxymethyltransferase7.1e-4398.9Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
        GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKL+EFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL

A0A5D3CX13 Glycine hydroxymethyltransferase2.4e-43100Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
        GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL

A0A5D3D173 Serine hydroxymethyltransferase3.4e-3789.01Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
        GDKSALV GGIRIGSPAMTTRGFTE+EFAAVA+FIHEGVKIT DAKPL PG KLQEFLKFVTT DFPL DRVSDLRS V+ALTTQFPIPGL
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL

A0A6J1J3Q5 Serine hydroxymethyltransferase3.4e-3789.01Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
        GDKSALV GGIRIGSPAMTTRGFTE+EF AVA+FIHEGVKIT DAKPL PG KLQEFLKFVTT DFPLIDRVSDLRS V+ALTTQFPIPGL
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL

SwissProt top hitse value%identityAlignment
P34897 Serine hydroxymethyltransferase, mitochondrial2.1e-1241.3Show/hide
Query:  CIGDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPG
        C GD+SA+  GG+R+G+PA+T+R F E +F  V +FI EGV I  + K      KLQ+F  F+   D     R+++LR  V+     FP+PG
Subjt:  CIGDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPG

P34898 Serine hydroxymethyltransferase, cytosolic7.4e-1341.76Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVP--GPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIP
        GDKSAL  GG+RIG+PAMT+RGF E +F  VA F+ E VK+  + +  +P    K ++F   + T D P   R+++L+  + A +  FP+P
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVP--GPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIP

P50432 Serine hydroxymethyltransferase6.7e-1445.74Show/hide
Query:  CIGDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKIT--FDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPG
        C GD SAL  GGIR+G+PA+T+RGF E++F  V +FIHEGV+I   ++A+    G  L++F  F  T + P    V+DL   V+  +T+F IPG
Subjt:  CIGDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKIT--FDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPG

Q3SZ20 Serine hydroxymethyltransferase, mitochondrial5.6e-1342.39Show/hide
Query:  CIGDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPG
        C GD+SA+  GG+R+G+PA+T+RGF E +F  V  FI EGV I  + K      KLQ+F  F+   D     +++DLR  V+     FP+PG
Subjt:  CIGDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPG

Q94JQ3 Serine hydroxymethyltransferase 3, chloroplastic1.2e-2662.64Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
        GDKSALV GGIRIGSPAMTTRG +E++F  VA+FI EGV+IT +AK   PG KLQ+F KFVT+ +FPL +RV  L+  V+  T++FPIPG+
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL

Arabidopsis top hitse value%identityAlignment
AT4G32520.1 serine hydroxymethyltransferase 38.3e-2862.64Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
        GDKSALV GGIRIGSPAMTTRG +E++F  VA+FI EGV+IT +AK   PG KLQ+F KFVT+ +FPL +RV  L+  V+  T++FPIPG+
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL

AT4G32520.2 serine hydroxymethyltransferase 38.3e-2862.64Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL
        GDKSALV GGIRIGSPAMTTRG +E++F  VA+FI EGV+IT +AK   PG KLQ+F KFVT+ +FPL +RV  L+  V+  T++FPIPG+
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPGL

AT4G37930.1 serine transhydroxymethyltransferase 11.7e-1238.89Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPG
        GD SA+V GGIR+G+PA+T+RGF E +FA VA +  + V I    K    G KL++F+  + +    +   ++ LR  V+    QFP  G
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPG

AT5G26780.1 serine hydroxymethyltransferase 21.7e-1242.22Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPG
        GD SA+V GGIR+G+PA+T+RGF E +FA VA +    VKI    K    G KL++F+  + + +  L   +S LR  V+    QFP  G
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPG

AT5G26780.3 serine hydroxymethyltransferase 21.7e-1242.22Show/hide
Query:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPG
        GD SA+V GGIR+G+PA+T+RGF E +FA VA +    VKI    K    G KL++F+  + + +  L   +S LR  V+    QFP  G
Subjt:  GDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCAACACGCTGATCATGGTCCAATTTTCTTGAACCGACTCTTGGCTCTTTTGTGCATAGGTGACAAGAGTGCTCTAGTTTCAGGAGGCATTCGAATTGGGTCACC
TGCCATGACCACCCGAGGTTTCACTGAGAGAGAGTTTGCTGCGGTTGCAAACTTCATCCACGAGGGTGTTAAGATAACTTTTGATGCCAAACCACTAGTCCCGGGACCAA
AGCTCCAAGAGTTCCTCAAGTTTGTGACAACTTTTGATTTCCCTTTGATCGATCGAGTTTCAGATCTTCGCTCGAGTGTCAAAGCTCTTACCACTCAATTCCCAATACCC
GGCCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCAACACGCTGATCATGGTCCAATTTTCTTGAACCGACTCTTGGCTCTTTTGTGCATAGGTGACAAGAGTGCTCTAGTTTCAGGAGGCATTCGAATTGGGTCACC
TGCCATGACCACCCGAGGTTTCACTGAGAGAGAGTTTGCTGCGGTTGCAAACTTCATCCACGAGGGTGTTAAGATAACTTTTGATGCCAAACCACTAGTCCCGGGACCAA
AGCTCCAAGAGTTCCTCAAGTTTGTGACAACTTTTGATTTCCCTTTGATCGATCGAGTTTCAGATCTTCGCTCGAGTGTCAAAGCTCTTACCACTCAATTCCCAATACCC
GGCCTTTGA
Protein sequenceShow/hide protein sequence
MFQHADHGPIFLNRLLALLCIGDKSALVSGGIRIGSPAMTTRGFTEREFAAVANFIHEGVKITFDAKPLVPGPKLQEFLKFVTTFDFPLIDRVSDLRSSVKALTTQFPIP
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