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IVF0011174 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011174
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionpentatricopeptide repeat-containing protein At3g18110, chloroplastic
Genome locationchr11:24217633..24218386
RNA-Seq ExpressionIVF0011174
SyntenyIVF0011174
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035564.1 Pentatricopeptide repeat-containing protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]8.11e-9488.14Show/hide
Query:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL
        +DASLQG PESPKSVVLITG+AEYNM+SLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFC DLELKDAPALPE NSMK+I+GCFIRRGL
Subjt:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL

Query:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKK
        VPAFKDIT RLGFVRPKKFSRLALLPDEKRDKVI+ADLEGRKEKLEKVK++I+SGK +RIT+IKKR Y+R L+A+KK
Subjt:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKK

TYK07589.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]4.01e-106100Show/hide
Query:  DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGLV
        DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGLV
Subjt:  DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGLV

Query:  PAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK
        PAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK
Subjt:  PAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK

XP_008463825.1 PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Cucumis melo]1.85e-10699.44Show/hide
Query:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL
        +DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL
Subjt:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL

Query:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK
        VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK
Subjt:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK

XP_011657187.1 pentatricopeptide repeat-containing protein At3g18110, chloroplastic isoform X1 [Cucumis sativus]1.00e-10094.94Show/hide
Query:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL
        +DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTR GLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVI+GCFIRRGL
Subjt:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL

Query:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK
        VPAFKDIT RLGFVRPKKFSRLALLPDEKRDKVI+ADLEGRKEKLEKV QLI+SGK KRI KIKKRAYYRRLDALKKK
Subjt:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK

XP_038901451.1 pentatricopeptide repeat-containing protein At3g18110, chloroplastic isoform X1 [Benincasa hispida]1.27e-9992.7Show/hide
Query:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL
        +DASLQGFPESPKSVVLITGTAEYNM+SLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPE NSMK+I+GCFIRRGL
Subjt:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL

Query:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK
        VPAFKDIT RLGFVRPKKFSRLALLPDEKRDKVI+ADLEGRKEKLEKVKQ+I+SGK +RI KIKKRAYYRRLDA+KKK
Subjt:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK

TrEMBL top hitse value%identityAlignment
A0A0A0KHH7 Uncharacterized protein9.7e-8894.94Show/hide
Query:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL
        +DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTR GLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVI+GCFIRRGL
Subjt:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL

Query:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK
        VPAFKDIT RLGFVRPKKFSRLALLPDEKRDKVI+ADLEGRKEKLEKV QLI+SGK KRI KIKKRAYYRRLDALKKK
Subjt:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK

A0A1S3CKK9 pentatricopeptide repeat-containing protein At3g18110, chloroplastic1.7e-9299.44Show/hide
Query:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL
        +DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL
Subjt:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL

Query:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK
        VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK
Subjt:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK

A0A5A7UY21 Pentatricopeptide repeat-containing protein1.7e-9299.44Show/hide
Query:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL
        +DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL
Subjt:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL

Query:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK
        VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK
Subjt:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK

A0A5D3CB97 Pentatricopeptide repeat-containing protein2.9e-92100Show/hide
Query:  DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGLV
        DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGLV
Subjt:  DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGLV

Query:  PAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK
        PAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK
Subjt:  PAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK

A0A6J1H2M4 pentatricopeptide repeat-containing protein At3g18110, chloroplastic6.1e-8288.14Show/hide
Query:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL
        +DASLQG PESPKSVVLITG+AEYNM+SLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFC DLELKDAPALPE NSMK+I+GCFIRRGL
Subjt:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL

Query:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKK
        VPAFKDIT RLGFVRPKKFSRLALLPDEKRDKVI+ADLEGRKEKLEKVK++I+SGK +RIT+IKKR Y+R L+A+KK
Subjt:  VPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKK

SwissProt top hitse value%identityAlignment
Q5G1S8 Pentatricopeptide repeat-containing protein At3g18110, chloroplastic1.1e-6176.16Show/hide
Query:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL
        +DASL+G+PESPKSVVLITGTAEYN ISL+ TLK CLWEMGSPFLPC+TR+GLL+AKAHSLRMWLKDS FC DLELKD+ +LPE NSM +I+GCFIRRGL
Subjt:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL

Query:  VPAFKDITGRL-GFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQ
        VPAF  I  RL GFV PKKFSRLALLPDE R++VI+ D+EG ++KLEK+K+
Subjt:  VPAFKDITGRL-GFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQ

Arabidopsis top hitse value%identityAlignment
AT3G18110.1 Pentatricopeptide repeat (PPR) superfamily protein8.2e-6376.16Show/hide
Query:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL
        +DASL+G+PESPKSVVLITGTAEYN ISL+ TLK CLWEMGSPFLPC+TR+GLL+AKAHSLRMWLKDS FC DLELKD+ +LPE NSM +I+GCFIRRGL
Subjt:  EDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGL

Query:  VPAFKDITGRL-GFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQ
        VPAF  I  RL GFV PKKFSRLALLPDE R++VI+ D+EG ++KLEK+K+
Subjt:  VPAFKDITGRL-GFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAAGCGTAATGGGCTGAATGGACTTTGGAATAGACAGGCCAAGTGGGATGAGGATGCATCATTGCAAGGTTTTCCAGAATCTCCAAAATCAGTTGTTCTGATCAC
TGGAACAGCAGAATATAACATGATTTCACTCAATAGCACACTGAAAGTATGTCTATGGGAGATGGGTTCTCCTTTTCTACCTTGTAGAACTCGTAGCGGTCTTCTTATAG
CAAAAGCTCACTCTCTCAGGATGTGGCTAAAAGACTCCTCTTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCGGCTCTACCAGAATTTAATTCGATGAAGGTCATCAAT
GGATGCTTCATAAGACGAGGTCTTGTTCCTGCATTCAAGGACATAACTGGAAGATTGGGATTTGTGAGGCCTAAGAAATTCTCTAGATTGGCTTTACTCCCTGATGAAAA
GAGAGATAAGGTCATTGAAGCGGATTTAGAAGGTAGGAAAGAGAAGCTTGAAAAAGTAAAACAACTTATCGAGTCAGGGAAGGCGAAGAGGATAACGAAGATTAAAAAGA
GGGCATACTATCGTAGACTCGATGCTCTAAAGAAAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGAAGCGTAATGGGCTGAATGGACTTTGGAATAGACAGGCCAAGTGGGATGAGGATGCATCATTGCAAGGTTTTCCAGAATCTCCAAAATCAGTTGTTCTGATCAC
TGGAACAGCAGAATATAACATGATTTCACTCAATAGCACACTGAAAGTATGTCTATGGGAGATGGGTTCTCCTTTTCTACCTTGTAGAACTCGTAGCGGTCTTCTTATAG
CAAAAGCTCACTCTCTCAGGATGTGGCTAAAAGACTCCTCTTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCGGCTCTACCAGAATTTAATTCGATGAAGGTCATCAAT
GGATGCTTCATAAGACGAGGTCTTGTTCCTGCATTCAAGGACATAACTGGAAGATTGGGATTTGTGAGGCCTAAGAAATTCTCTAGATTGGCTTTACTCCCTGATGAAAA
GAGAGATAAGGTCATTGAAGCGGATTTAGAAGGTAGGAAAGAGAAGCTTGAAAAAGTAAAACAACTTATCGAGTCAGGGAAGGCGAAGAGGATAACGAAGATTAAAAAGA
GGGCATACTATCGTAGACTCGATGCTCTAAAGAAAAAATAG
Protein sequenceShow/hide protein sequence
MLKRNGLNGLWNRQAKWDEDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIN
GCFIRRGLVPAFKDITGRLGFVRPKKFSRLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK