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IVF0011204 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011204
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr01:12396507..12396826
RNA-Seq ExpressionIVF0011204
SyntenyIVF0011204
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032394.1 retrotransposon protein [Cucumis melo var. makuwa]6.27e-2958.49Show/hide
Query:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC
        M++S+ A  H+W KEEE TLVE          W SDNGTFRPGYLAQ  RMMA K           IDC+IKTLKRTFQ IAE+   + SGFGWN+E KC
Subjt:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC

Query:  IIAEKE
        IIAEKE
Subjt:  IIAEKE

KAA0036099.1 retrotransposon protein [Cucumis melo var. makuwa]2.28e-2957.55Show/hide
Query:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC
        M++S+ A  H+W +EEE TLVE          W SDNGTFRPGYLAQL RMMA K           IDC+IKTLKRTFQ IAE+   + SGFGWN+E KC
Subjt:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC

Query:  IIAEKE
        I+AEKE
Subjt:  IIAEKE

KAA0046637.1 retrotransposon protein [Cucumis melo var. makuwa]9.26e-2956.6Show/hide
Query:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC
        M++S+ A  H+W +EEE TLVE          W SDNGTFRPGYLAQL RMMA K           IDC+IKTLKRTFQ IAE+   + SGFGWN+E KC
Subjt:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC

Query:  IIAEKE
        I+A+KE
Subjt:  IIAEKE

KAA0053616.1 retrotransposon protein [Cucumis melo var. makuwa]2.28e-2957.55Show/hide
Query:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC
        M++S+ A  H+W +EEE TLVE          W SDNGTFRPGYLAQL RMMA K           IDC+IKTLKRTFQ IAE+   + SGFGWN+E KC
Subjt:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC

Query:  IIAEKE
        I+AEKE
Subjt:  IIAEKE

KAA0065929.1 retrotransposon protein [Cucumis melo var. makuwa]4.62e-2960.38Show/hide
Query:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC
        M++S+ A  H+W KEEE TLVE          W SDNGTFRPGYLAQL RMMA K           IDC+IKTLKRTFQ IAE+   + SGFGWN+EVKC
Subjt:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC

Query:  IIAEKE
        IIAEKE
Subjt:  IIAEKE

TrEMBL top hitse value%identityAlignment
A0A5A7TZE1 Retrotransposon protein4.8e-2358.49Show/hide
Query:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC
        M++S+ A  H+W KEEE TLVE          W SDNGTFRPGYLAQL RMM  K           IDC+IKTLKRTFQ IAE+   +YSGFGWN+E KC
Subjt:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC

Query:  IIAEKE
        II EKE
Subjt:  IIAEKE

A0A5A7UFK7 Retrotransposon protein1.1e-2258.49Show/hide
Query:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC
        M++S+ A  H+W KEEE TLVE          W SDNGTFRPGYL QL RMMA K           IDC+IKTLKRTFQ IAEI   + SGFGWN+E KC
Subjt:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC

Query:  IIAEKE
        I+AEKE
Subjt:  IIAEKE

A0A5A7VES2 Retrotransposon protein3.7e-2359.43Show/hide
Query:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC
        M++S+ AS H+W +EEE TLVE          W SDNGTFRPGYLAQL RMMA K           IDC+IKTLKRTFQ IAE+   + SGFGWN+E KC
Subjt:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC

Query:  IIAEKE
        IIAEKE
Subjt:  IIAEKE

A0A5A7VKT2 Retrotransposon protein1.3e-2360.38Show/hide
Query:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC
        M++S+ A  H+W KEEE TLVE          W SDNGTFRPGYLAQL RMMA K           IDC+IKTLKRTFQ IAE+   + SGFGWN+EVKC
Subjt:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC

Query:  IIAEKE
        IIAEKE
Subjt:  IIAEKE

A0A5D3BT72 Retrotransposon protein8.2e-2358.49Show/hide
Query:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC
        M++S+ A  H+W KEEE TLVE          W SDNGTFRPGYLAQL RMMA K           IDC+IKTLKRTFQ IAE+   + SGFGWN+E KC
Subjt:  MASSSWASNHLWAKEEESTLVE----------WLSDNGTFRPGYLAQLQRMMAGK----------TIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKC

Query:  IIAEKE
        I+AEKE
Subjt:  IIAEKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGTTCATCATGGGCCTCTAATCACTTGTGGGCAAAAGAGGAGGAGTCCACCCTAGTTGAGTGGTTGTCGGACAATGGGACCTTTAGACCTGGGTACCTGGCACA
GCTCCAGAGAATGATGGCGGGAAAGACTATTGATTGTCAGATAAAGACCCTGAAGAGAACGTTTCAAGACATAGCAGAAATATGCAGGGCATCTTACAGTGGGTTTGGCT
GGAACAATGAAGTTAAGTGCATCATCGCTGAGAAGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGTTCATCATGGGCCTCTAATCACTTGTGGGCAAAAGAGGAGGAGTCCACCCTAGTTGAGTGGTTGTCGGACAATGGGACCTTTAGACCTGGGTACCTGGCACA
GCTCCAGAGAATGATGGCGGGAAAGACTATTGATTGTCAGATAAAGACCCTGAAGAGAACGTTTCAAGACATAGCAGAAATATGCAGGGCATCTTACAGTGGGTTTGGCT
GGAACAATGAAGTTAAGTGCATCATCGCTGAGAAGGAATAA
Protein sequenceShow/hide protein sequence
MASSSWASNHLWAKEEESTLVEWLSDNGTFRPGYLAQLQRMMAGKTIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKCIIAEKE