CuGenDBv2

Gene ID	IVF0011211
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr01:15524896..15525321
RNA-Seq Expression	IVF0011211
Synteny	IVF0011211
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0031555.1 retrotransposon protein [Cucumis melo var. makuwa]

1.68e-91

99.29

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Query:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL+QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

KAA0038065.1 retrotransposon protein [Cucumis melo var. makuwa]

6.81e-91

98.58

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Query:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL+QTNEQLREIAQWPARNLANDNHVRTEFFRILR+MPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

KAA0053857.1 retrotransposon protein [Cucumis melo var. makuwa]

6.54e-94

99.29

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Query:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL+QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

KAA0065692.1 retrotransposon protein [Cucumis melo var. makuwa]

2.47e-91

97.16

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Query:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDVRASRPSRAS+GRTGSSGSKRKRGSQRDFELEAIH+AL+QTNEQLREIA+WPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

TYJ96194.1 retrotransposon protein [Cucumis melo var. makuwa]

4.80e-91

98.58

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Query:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIH+AL+QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9G6 Retrotransposon protein

1.7e-70

98.58

Show/hide

Query:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL+QTNEQLREIAQWPARNLANDNHVRTEFFRILR+MPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5A7TRV1 Retrotransposon protein

8.6e-70

97.16

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Query:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDVRASRPSRAS+GRTGSSGSKRKRGSQRDFELEAIH+AL+QTNEQLREIA+WPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5A7UH50 Retrotransposon protein

5.9e-71

99.29

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Query:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL+QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5D3BCN9 Retrotransposon protein

1.3e-70

98.58

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Query:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIH+AL+QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5D3CWL2 Retrotransposon protein

5.9e-71

99.29

Show/hide

Query:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL+QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGATGGTAGGACCGG
ATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATGTGGCGCTCGAGCAAACAAACGAGCAACTCAGGGAGATTGCGCAGTGGC
CAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAAATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTT
TTGTCTCGTATGGACGACCTCCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHL
LSRMDDLRGFVLMPEDEREGFCRVLLRDIER

IVF0011211 (gene) of Melon (IVF77) v1 genome