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IVF0011213 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011213
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr12:7546277..7546809
RNA-Seq ExpressionIVF0011213
SyntenyIVF0011213
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041673.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]4.12e-83100Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS
KAA0056777.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.55e-83100Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS
KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.55e-83100Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS
KAA0068172.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.02e-8299.17Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEP+FDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS
TYK28077.1 polyprotein [Cucumis melo var. makuwa]1.45e-8299.17Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWL AYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS
TrEMBL top hitse value%identityAlignment
A0A0A0LWK6 Uncharacterized protein1.7e-7087.5Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSV EVC Q+FPHGFNFLPEDLSKTRTFYE+ILVDSKSAEITHVPDKNDPSKIIYSKLRIF+VLTPSYWKQGMFVG++FS PFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHSC--STFVPPFPTKYLFVTSFKDL
        NYRDYTKAWYI+FWLQAYNHSC  STF+P  PTKYL V+S KD+
Subjt:  NYRDYTKAWYIVFWLQAYNHSC--STFVPPFPTKYLFVTSFKDL
A0A5A7UVN1 Retrotransposable element Tf21.5e-66100Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS
A0A5A7V6D1 Retrotransposable element Tf21.5e-66100Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS
A0A5A7VIK9 Retrotransposable element Tf24.4e-6699.17Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEP+FDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS
A0A5D3C4Q3 Retrotransposable element Tf21.5e-66100Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAGGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTACCTGAGGATCTTTCAAAAAC
TAGAACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCCCAGATAAAAATGATCCCTCCAAGATCATTTACTCAAAGTTGAGAATTTTTC
GTGTTCTCACTCCATCTTACTGGAAACAAGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCTTCATACAATTATCGTGACTATACAAAGGCATGGTAT
ATTGTATTTTGGCTCCAAGCTTATAATCATTCTTGTTCAACGTTCGTACCACCTTTTCCAACAAAGTATCTATTCGTCACCTCTTTCAAAGACCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAGGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTACCTGAGGATCTTTCAAAAAC
TAGAACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCCCAGATAAAAATGATCCCTCCAAGATCATTTACTCAAAGTTGAGAATTTTTC
GTGTTCTCACTCCATCTTACTGGAAACAAGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCTTCATACAATTATCGTGACTATACAAAGGCATGGTAT
ATTGTATTTTGGCTCCAAGCTTATAATCATTCTTGTTCAACGTTCGTACCACCTTTTCCAACAAAGTATCTATTCGTCACCTCTTTCAAAGACCTTTAG
Protein sequenceShow/hide protein sequence
MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWY
IVFWLQAYNHSCSTFVPPFPTKYLFVTSFKDL