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IVF0011262 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011262
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr04:32122721..32123008
RNA-Seq ExpressionIVF0011262
SyntenyIVF0011262
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044227.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.70e-6298.95Show/hide
Query:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
        MK DFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
Subjt:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA

KAG6580429.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]9.23e-3668.42Show/hide
Query:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
        MK++ QVIDRSTY LLIQALCS N  SEALANLHHMI KGY P  I IDV+VQ LCH G   E  CVLGHGI F+ ISFDL++ ELN +GM+ SA
Subjt:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA

TYK24907.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.46e-63100Show/hide
Query:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
        MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
Subjt:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA

XP_022982589.1 pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Cucurbita maxima]2.39e-3770.53Show/hide
Query:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
        MK++FQVIDRSTY LLIQALCS N  SEALANLHHMI KGY P  I IDV+VQ LCH GS  E  CVLGHGI F+ ISFDL++ ELN +GM++SA
Subjt:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA

XP_038904608.1 pentatricopeptide repeat-containing protein At1g09900-like [Benincasa hispida]9.64e-4276.84Show/hide
Query:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
        MKDD+QVID+STY LLIQALCS NMISEALANLHHMIEKGY P  IIIDV+VQTLCHRGS+DE   VLGHGIPF   SFDL++ ELN Q M  SA
Subjt:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA

TrEMBL top hitse value%identityAlignment
A0A5A7TQU3 Pentatricopeptide repeat-containing protein2.6e-4698.95Show/hide
Query:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
        MK DFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
Subjt:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA

A0A5D3DMQ7 Pentatricopeptide repeat-containing protein4.0e-47100Show/hide
Query:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
        MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
Subjt:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA

A0A6J1DW66 pentatricopeptide repeat-containing protein At1g09900-like1.5e-2254.81Show/hide
Query:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLG---------HGIPFTTISFDLLMHELNTQGM
        MK++FQVI RSTY ++I ALCS N ISEA+ANLHHMI KGY P  I I+V+V+ LC RGS +E   V+G         H IPF+ +S+DL++ ELN QGM
Subjt:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLG---------HGIPFTTISFDLLMHELNTQGM

Query:  YISA
        +  A
Subjt:  YISA

A0A6J1F9P1 pentatricopeptide repeat-containing protein At1g09900-like1.4e-2868.42Show/hide
Query:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
        MK++ QVIDRSTY LLIQALCS N  SEALANLHHMI KGY P  I IDV+VQ LCH G   E  CVLGHGI F+ ISFDL++ ELN +GM+ SA
Subjt:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA

A0A6J1J506 pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like5.8e-3070.53Show/hide
Query:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
        MK++FQVIDRSTY LLIQALCS N  SEALANLHHMI KGY P  I IDV+VQ LCH GS  E  CVLGHGI F+ ISFDL++ ELN +GM++SA
Subjt:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA

SwissProt top hitse value%identityAlignment
O49436 Pentatricopeptide repeat-containing protein At4g200901.1e-0427.91Show/hide
Query:  DRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH----GIPFTTISFDLLMHELNTQG
        D  TY  L+  LC    I EA+  L  M  +G  P+P+I +V++  LC +G +   + ++ +    G     ++++ L+H L  +G
Subjt:  DRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH----GIPFTTISFDLLMHELNTQG

Q9ASZ8 Pentatricopeptide repeat-containing protein At1g126205.3e-0436.36Show/hide
Query:  DRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDE
        D  T++ LI  LC    +SEAL  +  M+E G+ PT I ++ +V  LC  G + +
Subjt:  DRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDE

Q9CAN5 Pentatricopeptide repeat-containing protein At1g63080, mitochondrial5.3e-0430.38Show/hide
Query:  TYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH----GIPFTTISFDLLMHEL
        TY ++I  LC  + +S ALA L  M++ GY P+ + ++ ++   CH   I E   ++      G    T++F  L+H L
Subjt:  TYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH----GIPFTTISFDLLMHEL

Q9SHK2 Pentatricopeptide repeat-containing protein At1g065805.3e-0425.88Show/hide
Query:  TYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH----GIPFTTISFDLLMHELNTQGMY
        T+  L+   C  N   EA++ +  ++  GY P  +I + I+ +LC +G ++    VL H    GI    ++++ L+  L   G +
Subjt:  TYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH----GIPFTTISFDLLMHELNTQGMY

Arabidopsis top hitse value%identityAlignment
AT1G06580.1 Pentatricopeptide repeat (PPR) superfamily protein3.8e-0525.88Show/hide
Query:  TYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH----GIPFTTISFDLLMHELNTQGMY
        T+  L+   C  N   EA++ +  ++  GY P  +I + I+ +LC +G ++    VL H    GI    ++++ L+  L   G +
Subjt:  TYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH----GIPFTTISFDLLMHELNTQGMY

AT1G12620.1 Pentatricopeptide repeat (PPR) superfamily protein3.8e-0536.36Show/hide
Query:  DRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDE
        D  T++ LI  LC    +SEAL  +  M+E G+ PT I ++ +V  LC  G + +
Subjt:  DRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDE

AT1G63080.1 Pentatricopeptide repeat (PPR) superfamily protein3.8e-0530.38Show/hide
Query:  TYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH----GIPFTTISFDLLMHEL
        TY ++I  LC  + +S ALA L  M++ GY P+ + ++ ++   CH   I E   ++      G    T++F  L+H L
Subjt:  TYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH----GIPFTTISFDLLMHEL

AT1G77340.1 Pentatricopeptide repeat (PPR) superfamily protein1.2e-0637.14Show/hide
Query:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH
        MKDD    +  TY +LI ALC +   SEA+     M E G  P   +  V++Q+ C   ++DE S +L H
Subjt:  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH

AT4G20090.1 Pentatricopeptide repeat (PPR) superfamily protein7.6e-0627.91Show/hide
Query:  DRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH----GIPFTTISFDLLMHELNTQG
        D  TY  L+  LC    I EA+  L  M  +G  P+P+I +V++  LC +G +   + ++ +    G     ++++ L+H L  +G
Subjt:  DRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH----GIPFTTISFDLLMHELNTQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGACGACTTTCAAGTTATTGATCGGAGTACATATGCCCTGCTGATCCAAGCACTATGTTCAGCAAACATGATTTCGGAGGCACTTGCAAATTTGCATCATATGAT
TGAAAAAGGCTACCCTCCAACACCGATTATCATTGACGTTATTGTTCAAACACTTTGTCACAGGGGAAGCATCGACGAAACATCGTGTGTTTTGGGGCATGGAATCCCTT
TCACAACGATTTCTTTTGACTTGTTAATGCATGAGCTTAATACACAGGGAATGTATATCAGTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGACGACTTTCAAGTTATTGATCGGAGTACATATGCCCTGCTGATCCAAGCACTATGTTCAGCAAACATGATTTCGGAGGCACTTGCAAATTTGCATCATATGAT
TGAAAAAGGCTACCCTCCAACACCGATTATCATTGACGTTATTGTTCAAACACTTTGTCACAGGGGAAGCATCGACGAAACATCGTGTGTTTTGGGGCATGGAATCCCTT
TCACAACGATTTCTTTTGACTTGTTAATGCATGAGCTTAATACACAGGGAATGTATATCAGTGCTTGA
Protein sequenceShow/hide protein sequence
MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA