CuGenDBv2

Gene ID	IVF0011273
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr09:8049672..8050235
RNA-Seq Expression	IVF0011273
Synteny	IVF0011273
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040535.1 receptor-like protein 12 [Cucumis melo var. makuwa]

2.52e-76

97.39

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Query:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY
        MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY
Subjt:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY

Query:  DTEEAGSKKYAVSQY
        DTEEAGSKKYA   Y
Subjt:  DTEEAGSKKYAVSQY

KAA0050358.1 uncharacterized protein E6C27_scaffold88G00900 [Cucumis melo var. makuwa]

1.98e-64

59.36

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Query:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY
        +++  LN PF F+GA+FKRWKQKMLFFLTLKKVATTCT E+LKV + DP EEQL+   TWTE+DFI KNLI NGLTDELYDYYST++T KEVWDA QKKY
Subjt:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY

Query:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL
        DTEE GSKKYAV+ YL Y +                                       LP LWKDFKNTL+HK K FSLES ITRL
Subjt:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL

KAA0060458.1 uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa]

2.62e-70

62.03

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Query:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY
        +++S LNR F F+GA+FKRWKQK+LFFLTLKKVAT CT E+ KV + DP EEQL+   TWTE+DFICKNLI NGLTDELYDYYST++T KEVWDALQKKY
Subjt:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY

Query:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL
        DTEEAGSKKYAVS+YL Y M                                       LPPLWKDFKNTL+HK KEFSLES ITRL
Subjt:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL

KAA0065374.1 uncharacterized protein E6C27_scaffold17G00360 [Cucumis melo var. makuwa]

6.62e-66

62.57

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Query:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY
        +++S LNRPF F+GA+FKRWKQKMLFFLTLKKVAT CT E+LKV + DPIEEQL+   TWTE+DFICKNLI NGLTDELYDYYST++T KEVWDALQKKY
Subjt:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY

Query:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL
        DT+EA SKKYAVS+YL Y M                                       LP LWKDFKNTL+HK KEFSLES ITRL
Subjt:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL

TYJ98000.1 hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa]

4.25e-65

60.96

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Query:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY
        +++S LNRPF F+GA+FKRWKQKMLFFLTLKKVAT CT E+ KV + DP +EQL+  TTWTE+DFICKNLI NGLTDELYDYYST++T K+VW+ALQKKY
Subjt:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY

Query:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL
        DTEEAGSKKYAVS+YL Y M                                       LP LWKDFKNTL+HK KEFSLE+ ITRL
Subjt:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TGJ2 Receptor-like protein 12

4.6e-58

97.39

Show/hide

Query:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY
        MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY
Subjt:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY

Query:  DTEEAGSKKYAVSQY
        DTEEAGSKKYA   Y
Subjt:  DTEEAGSKKYAVSQY

A0A5A7UA92 Uncharacterized protein

1.4e-51

59.89

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Query:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY
        +++S LNRPF F+GA+FKRWKQKMLFFLTLKKVAT CT E+ KV + DP +EQL+  TTWTE+DFICKNLI NGLTDELYDYYST++T K+VW+ALQKKY
Subjt:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY

Query:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL
        DTEEAGSKKYAVS+YL Y M                                       L  LWKDFKNTL+HK KEFSLE+  TRL
Subjt:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL

A0A5A7UYY4 Uncharacterized protein

5.3e-54

62.03

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Query:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY
        +++S LNR F F+GA+FKRWKQK+LFFLTLKKVAT CT E+ KV + DP EEQL+   TWTE+DFICKNLI NGLTDELYDYYST++T KEVWDALQKKY
Subjt:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY

Query:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL
        DTEEAGSKKYAVS+YL Y M                                       LPPLWKDFKNTL+HK KEFSLES ITRL
Subjt:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL

A0A5D3BDS3 Uncharacterized protein

5.9e-53

60.96

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Query:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY
        +++S LNRPF F+GA+FKRWKQKMLFFLTLKKVAT CT E+ KV + DP +EQL+  TTWTE+DFICKNLI NGLTDELYDYYST++T K+VW+ALQKKY
Subjt:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY

Query:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL
        DTEEAGSKKYAVS+YL Y M                                       LP LWKDFKNTL+HK KEFSLE+ ITRL
Subjt:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL

A0A5D3DC59 Reverse transcriptase Ty1/copia-type domain-containing protein

2.4e-54

62.57

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Query:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY
        +++S LNRPF F+GA+FKRWKQKMLFFLTLKKVAT CT E+LKV + DPIEEQL+   TWTE+DFICKNLI NGLTDELYDYYST++T KEVWDALQKKY
Subjt:  MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKY

Query:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL
        DT+EA SKKYAVS+YL Y M                                       LP LWKDFKNTL+HK KEFSLES ITRL
Subjt:  DTEEAGSKKYAVSQYLWYHM---------------------------------------LPPLWKDFKNTLKHKMKEFSLESQITRL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G00980.1 zinc knuckle (CCHC-type) family protein

4.1e-06

28.57

Show/hide

Query:  FKGAYFKRWKQKMLFFLTLKKVATTCTNE-----ELKVPKIDPIEEQLQAQTT---WTESDFICKNLIFNGLTDELYDYYS-TISTMKEVWDALQKKYDT
        F G  +  W  +M  FL   K+    +         + P+ +P  E  +A  T   W   D++C   + N L+D LY  YS      KE+WD L+  Y  
Subjt:  FKGAYFKRWKQKMLFFLTLKKVATTCTNE-----ELKVPKIDPIEEQLQAQTT---WTESDFICKNLIFNGLTDELYDYYS-TISTMKEVWDALQKKYDT

Query:  EEAGSKKYAVSQYLWYHML
        +E+ SK+  V +Y+ + M+
Subjt:  EEAGSKKYAVSQYLWYHML

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTAACCTCATATTTGAACCGACCATTCTGCTTTAAAGGAGCCTACTTCAAACGTTGGAAGCAGAAGATGTTATTTTTCTTAACTCTAAAAAAGGTTGCCACTACATG
CACCAACGAAGAGCTAAAAGTTCCCAAGATTGATCCAATCGAGGAGCAACTCCAGGCTCAGACCACATGGACAGAGTCAGATTTTATTTGTAAAAATCTCATATTTAATG
GACTTACTGACGAACTCTATGATTATTACAGTACTATCTCCACAATGAAAGAAGTCTGGGATGCATTACAAAAGAAGTACGACACTGAAGAAGCTGGATCCAAGAAGTAT
GCAGTAAGTCAATACTTGTGGTACCATATGCTACCTCCACTATGGAAGGACTTTAAAAATACCCTAAAGCATAAGATGAAGGAGTTCTCTCTGGAGAGCCAGATCACTCG
ACTGTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKY
AVSQYLWYHMLPPLWKDFKNTLKHKMKEFSLESQITRL

IVF0011273 (gene) of Melon (IVF77) v1 genome