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IVF0011297 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011297
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:9415213..9416057
RNA-Seq ExpressionIVF0011297
SyntenyIVF0011297
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032450.1 hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa]2.33e-6151.52Show/hide
Query:  MLQTRIFPCVATKRIIIFIFIFSQVLHREDLHFLSSHMCCSRKGRQLKY---VTVEN---FVVSNMLQLRRSSSQICYSRECC-LKYVATEKVVVSNMSQ
        MLQTRIFP VA KRI  FIFIFS VL   DL   SS+M CSR+   L     V  E    F++SNMLQ +RSSSQ+  SRECC L+YV TEK +VS + Q
Subjt:  MLQTRIFPCVATKRIIIFIFIFSQVLHREDLHFLSSHMCCSRKGRQLKY---VTVEN---FVVSNMLQLRRSSSQICYSRECC-LKYVATEKVVVSNMSQ

Query:  PRRSLSQIYCSRKGRRLKYVAVENV-----------VVSNMLQPRRSS-QICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQIC-----
        PR S SQI C R+GR LKYVAVE +           +VSNMLQPRRSS QIC S++  C +Y+  +KVVVS +L           QPR S SQIC     
Subjt:  PRRSLSQIYCSRKGRRLKYVAVENV-----------VVSNMLQPRRSS-QICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQIC-----

Query:  -----------------CSENTVVSNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQPRM
                          +E  +VSNML PR SSSQICCS++Y  LKY+V + VVVS MLQPRM
Subjt:  -----------------CSENTVVSNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQPRM

KAA0051981.1 hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa]2.63e-6756.79Show/hide
Query:  MLQTRIFPCVATKRIIIFIFIFSQVLHREDLHFLSSHMCCSRKGRQLKYVTVENFVVSNMLQLRRSSSQICYSRE-----CCLKYVATEKVVVSNMSQPR
        MLQT IFP VATKRI  FIFIFS   H       SS +CCS+K  +LKY+  EN VVS+MLQ R SSS+ICY+RE       LKYVA EK++VSNM QPR
Subjt:  MLQTRIFPCVATKRIIIFIFIFSQVLHREDLHFLSSHMCCSRKGRQLKYVTVENFVVSNMLQLRRSSSQICYSRE-----CCLKYVATEKVVVSNMSQPR

Query:  RSLSQIYCSRKGRRLKYVAVENVVVSNMLQPRRSS-QICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCS-----------ENTVV
        RS SQI CS+K   LKY+  E VVVS +LQPR SS QIC  REGR L+YVA +K++V   +   K +  N LQPRRS SQICCS           E  VV
Subjt:  RSLSQIYCSRKGRRLKYVAVENVVVSNMLQPRRSS-QICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCS-----------ENTVV

Query:  SNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQPRMLSS
        S ML PR SSSQIC  ++   LKY+V + VVVS ML PRM SS
Subjt:  SNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQPRMLSS

KAA0064215.1 hypothetical protein E6C27_scaffold548G001630 [Cucumis melo var. makuwa]4.41e-5557.21Show/hide
Query:  SSHMCCSRKGRQLKYVTVENF-----------VVSNMLQLRRSSSQICYS-RECCLKYVATEKVVVSNMSQPRRSLSQIYCSRKGRRLKYVAVENVVVSN
        SS +CC R+G  LKYV  E             +VSNMLQ RRSSSQIC S ++ CLKY+  EKVVVS M QPRRS SQI CS+K   LKY+  E VV+S 
Subjt:  SSHMCCSRKGRQLKYVTVENF-----------VVSNMLQLRRSSSQICYS-RECCLKYVATEKVVVSNMSQPRRSLSQIYCSRKGRRLKYVAVENVVVSN

Query:  MLQPRRSS-QICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCSENTVVSNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQP
        MLQPR SS QIC  REGR L+YVA KK+VV   +   K +  N L+          ++N VVS ML P+ISSSQICCSRE  RLKYVV++NVVVSNMLQP
Subjt:  MLQPRRSS-QICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCSENTVVSNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQP

Query:  R
        R
Subjt:  R

TYK04576.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.52e-6356.79Show/hide
Query:  MLQTRIFPCVATKRIIIFIFIFSQVLHREDLHFLSSHMCCSRKGRQLKYVTVENFVVSNMLQLRRSSSQICYSRE-----CCLKYVATEKVVVSNMSQPR
        MLQT IFP VATKRI  FIFIFS   H       SS +CCS+K  +LKY+  EN VVS+MLQ R SSS+ICY+RE       LKYVA EK++VSNM QPR
Subjt:  MLQTRIFPCVATKRIIIFIFIFSQVLHREDLHFLSSHMCCSRKGRQLKYVTVENFVVSNMLQLRRSSSQICYSRE-----CCLKYVATEKVVVSNMSQPR

Query:  RSLSQIYCSRKGRRLKYVAVENVVVSNMLQPRRSS-QICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCS-----------ENTVV
        RS SQI CS+K   LKY+  E VVVS +LQPR SS QIC  REGR L+YVA +K++V   +   K +  N LQPRRS SQICCS           E  VV
Subjt:  RSLSQIYCSRKGRRLKYVAVENVVVSNMLQPRRSS-QICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCS-----------ENTVV

Query:  SNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQPRMLSS
        S ML PR SSSQIC  ++   LKY+V + VVVS ML PRM SS
Subjt:  SNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQPRMLSS

TYK18585.1 hypothetical protein E5676_scaffold119G001120 [Cucumis melo var. makuwa]4.28e-5457.21Show/hide
Query:  SSHMCCSRKGRQLKYVTVENF-----------VVSNMLQLRRSSSQICYS-RECCLKYVATEKVVVSNMSQPRRSLSQIYCSRKGRRLKYVAVENVVVSN
        SS +CC R+G  LKYV  E             +VSNMLQ RRSSSQIC S ++ CLKY+  EKVVVS M QPRRS SQI CS+K   LKY+  E VV+S 
Subjt:  SSHMCCSRKGRQLKYVTVENF-----------VVSNMLQLRRSSSQICYS-RECCLKYVATEKVVVSNMSQPRRSLSQIYCSRKGRRLKYVAVENVVVSN

Query:  MLQPRRSS-QICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCSENTVVSNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQP
        MLQPR SS QIC  REGR L+YVA KK+VV   +   K +  N L+          ++N VVS ML P+ISSSQICCSRE  RLKYVV++NVVVSNMLQP
Subjt:  MLQPRRSS-QICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCSENTVVSNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQP

Query:  R
        R
Subjt:  R

TrEMBL top hitse value%identityAlignment
A0A5A7SNS6 Uncharacterized protein1.0e-4851.52Show/hide
Query:  MLQTRIFPCVATKRIIIFIFIFSQVLHREDLHFLSSHMCCSRKGRQLKY---VTVEN---FVVSNMLQLRRSSSQICYSRECC-LKYVATEKVVVSNMSQ
        MLQTRIFP VA KR  IFIFIFS VL   DL   SS+M CSR+   L     V  E    F++SNMLQ +RSSSQ+  SRECC L+YV TEK +VS + Q
Subjt:  MLQTRIFPCVATKRIIIFIFIFSQVLHREDLHFLSSHMCCSRKGRQLKY---VTVEN---FVVSNMLQLRRSSSQICYSRECC-LKYVATEKVVVSNMSQ

Query:  PRRSLSQIYCSRKGRRLKYVAV-----------ENVVVSNMLQPRR-SSQICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQIC-----
        PR S SQI C R+GR LKYVAV           E ++VSNMLQPRR SSQIC S++  C +Y+  +KVVVS +           LQPR S SQIC     
Subjt:  PRRSLSQIYCSRKGRRLKYVAV-----------ENVVVSNMLQPRR-SSQICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQIC-----

Query:  -----------------CSENTVVSNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQPRM
                          +E  +VSNML PR SSSQICCS++Y  LKY+V + VVVS MLQPRM
Subjt:  -----------------CSENTVVSNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQPRM

A0A5A7UEK9 Uncharacterized protein3.6e-5456.79Show/hide
Query:  MLQTRIFPCVATKRIIIFIFIFSQVLHREDLHFLSSHMCCSRKGRQLKYVTVENFVVSNMLQLRRSSSQICYSRE-----CCLKYVATEKVVVSNMSQPR
        MLQT IFP VATKR  IFIFIFS   H       SS +CCS+K  +LKY+  EN VVS+MLQ R SSS+ICY+RE       LKYVA EK++VSNM QPR
Subjt:  MLQTRIFPCVATKRIIIFIFIFSQVLHREDLHFLSSHMCCSRKGRQLKYVTVENFVVSNMLQLRRSSSQICYSRE-----CCLKYVATEKVVVSNMSQPR

Query:  RSLSQIYCSRKGRRLKYVAVENVVVSNMLQPR-RSSQICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCS-----------ENTVV
        RS SQI CS+K   LKY+  E VVVS +LQPR  SSQIC  REGR L+YVA +K++V   +   K +  N LQPRRS SQICCS           E  VV
Subjt:  RSLSQIYCSRKGRRLKYVAVENVVVSNMLQPR-RSSQICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCS-----------ENTVV

Query:  SNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQPRMLSS
        S ML PR SSSQIC  ++   LKY+V + VVVS ML PRM SS
Subjt:  SNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQPRMLSS

A0A5A7VE92 Uncharacterized protein3.1e-4557.21Show/hide
Query:  SSHMCCSRKGRQ-----------LKYVTVENFVVSNMLQLRRSSSQICYS-RECCLKYVATEKVVVSNMSQPRRSLSQIYCSRKGRRLKYVAVENVVVSN
        SS +CC R+G             LKYV  E  +VSNMLQ RRSSSQIC S ++ CLKY+  EKVVVS M QPRRS SQI CS+K   LKY+  E VV+S 
Subjt:  SSHMCCSRKGRQ-----------LKYVTVENFVVSNMLQLRRSSSQICYS-RECCLKYVATEKVVVSNMSQPRRSLSQIYCSRKGRRLKYVAVENVVVSN

Query:  MLQPR-RSSQICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCSENTVVSNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQP
        MLQPR  SSQIC  REGR L+YVA KK+VV   +   K +  N L       +   ++N VVS ML P+ISSSQICCSRE  RLKYVV++NVVVSNMLQP
Subjt:  MLQPR-RSSQICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCSENTVVSNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQP

Query:  R
        R
Subjt:  R

A0A5D3C2C8 Retrotransposon gag protein3.6e-5456.79Show/hide
Query:  MLQTRIFPCVATKRIIIFIFIFSQVLHREDLHFLSSHMCCSRKGRQLKYVTVENFVVSNMLQLRRSSSQICYSRE-----CCLKYVATEKVVVSNMSQPR
        MLQT IFP VATKR  IFIFIFS   H       SS +CCS+K  +LKY+  EN VVS+MLQ R SSS+ICY+RE       LKYVA EK++VSNM QPR
Subjt:  MLQTRIFPCVATKRIIIFIFIFSQVLHREDLHFLSSHMCCSRKGRQLKYVTVENFVVSNMLQLRRSSSQICYSRE-----CCLKYVATEKVVVSNMSQPR

Query:  RSLSQIYCSRKGRRLKYVAVENVVVSNMLQPR-RSSQICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCS-----------ENTVV
        RS SQI CS+K   LKY+  E VVVS +LQPR  SSQIC  REGR L+YVA +K++V   +   K +  N LQPRRS SQICCS           E  VV
Subjt:  RSLSQIYCSRKGRRLKYVAVENVVVSNMLQPR-RSSQICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCS-----------ENTVV

Query:  SNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQPRMLSS
        S ML PR SSSQIC  ++   LKY+V + VVVS ML PRM SS
Subjt:  SNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQPRMLSS

A0A5D3D4V9 Uncharacterized protein3.1e-4557.21Show/hide
Query:  SSHMCCSRKGRQ-----------LKYVTVENFVVSNMLQLRRSSSQICYS-RECCLKYVATEKVVVSNMSQPRRSLSQIYCSRKGRRLKYVAVENVVVSN
        SS +CC R+G             LKYV  E  +VSNMLQ RRSSSQIC S ++ CLKY+  EKVVVS M QPRRS SQI CS+K   LKY+  E VV+S 
Subjt:  SSHMCCSRKGRQ-----------LKYVTVENFVVSNMLQLRRSSSQICYS-RECCLKYVATEKVVVSNMSQPRRSLSQIYCSRKGRRLKYVAVENVVVSN

Query:  MLQPR-RSSQICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCSENTVVSNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQP
        MLQPR  SSQIC  REGR L+YVA KK+VV   +   K +  N L       +   ++N VVS ML P+ISSSQICCSRE  RLKYVV++NVVVSNMLQP
Subjt:  MLQPR-RSSQICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCSENTVVSNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQP

Query:  R
        R
Subjt:  R

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAGACAAGAATCTTCCCATGTGTTGCAACCAAGAGGATCATCATCTTTATCTTCATCTTCTCACAGGTGTTGCATAGAGAGGATCTACATTTTTTATCTTCTCA
CATGTGTTGCAGCCGAAAAGGTCGTCAACTCAAATATGTTACAGTTGAGAATTTCGTTGTCTCAAATATGTTGCAGCTGAGAAGGTCATCATCTCAAATATGTTACAGTC
GAGAATGTTGTCTCAAATATGTTGCAACTGAGAAGGTCGTCGTCTCAAATATGTCGCAACCGAGAAGGTCATTGTCTCAAATATATTGCAGTCGAAAAGGTCGTCGTCTC
AAATATGTTGCAGTCGAGAATGTCGTTGTCTCAAATATGTTGCAACCGAGAAGGTCATCTCAAATATGTTACAGCCGAGAAGGTCGTTGTCTCCAATATGTTGCAGTAAA
AAAGGTTGTTGTCTCAAATATGCTGTGGCTGAGAAAATCATTGTTCTTAAATAAGTTGCAGCCGAGAAGGTCGTTGTCTCAAATATGTTGCAGCGAGAATACCGTCGTCT
CAAATATGTTACCGCCGAGAATATCATCCTCTCAAATATGTTGCAGTCGAGAATATCATCGTCTCAAATATGTTGTAGTCAAGAATGTTGTCGTCTCAAATATGTTGCAG
CCGAGAATGTTGTCGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAGACAAGAATCTTCCCATGTGTTGCAACCAAGAGGATCATCATCTTTATCTTCATCTTCTCACAGGTGTTGCATAGAGAGGATCTACATTTTTTATCTTCTCA
CATGTGTTGCAGCCGAAAAGGTCGTCAACTCAAATATGTTACAGTTGAGAATTTCGTTGTCTCAAATATGTTGCAGCTGAGAAGGTCATCATCTCAAATATGTTACAGTC
GAGAATGTTGTCTCAAATATGTTGCAACTGAGAAGGTCGTCGTCTCAAATATGTCGCAACCGAGAAGGTCATTGTCTCAAATATATTGCAGTCGAAAAGGTCGTCGTCTC
AAATATGTTGCAGTCGAGAATGTCGTTGTCTCAAATATGTTGCAACCGAGAAGGTCATCTCAAATATGTTACAGCCGAGAAGGTCGTTGTCTCCAATATGTTGCAGTAAA
AAAGGTTGTTGTCTCAAATATGCTGTGGCTGAGAAAATCATTGTTCTTAAATAAGTTGCAGCCGAGAAGGTCGTTGTCTCAAATATGTTGCAGCGAGAATACCGTCGTCT
CAAATATGTTACCGCCGAGAATATCATCCTCTCAAATATGTTGCAGTCGAGAATATCATCGTCTCAAATATGTTGTAGTCAAGAATGTTGTCGTCTCAAATATGTTGCAG
CCGAGAATGTTGTCGTCTTAA
Protein sequenceShow/hide protein sequence
MLQTRIFPCVATKRIIIFIFIFSQVLHREDLHFLSSHMCCSRKGRQLKYVTVENFVVSNMLQLRRSSSQICYSRECCLKYVATEKVVVSNMSQPRRSLSQIYCSRKGRRL
KYVAVENVVVSNMLQPRRSSQICYSREGRCLQYVAVKKVVVSNMLWLRKSLFLNKLQPRRSLSQICCSENTVVSNMLPPRISSSQICCSREYHRLKYVVVKNVVVSNMLQ
PRMLSS