; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0011317 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011317
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRNA-binding protein 48
Genome locationchr03:27068121..27072150
RNA-Seq ExpressionIVF0011317
SyntenyIVF0011317
Gene Ontology termsGO:0005654 - nucleoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR034264 - RBM48, RNA recognition motif
IPR035979 - RNA-binding domain superfamily
IPR039599 - RNA-binding protein 48


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142975.1 RNA-binding protein 48 isoform X2 [Cucumis sativus]1.67e-14594.25Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MP FRDE LAVRAYTVCDESRYLIVRNVPALGCGD LHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD
        ESL+DTKEKLEVRRREVLARLDSGRPRG+AVSSTTAKLTN SRS+YTL+QKNSLE RNYGDAALIS+PHVSQ+TRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRLDNRRRI
        KIQSSSEHLQAGPASKKSR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRLDNRRRI

XP_008444339.1 PREDICTED: RNA-binding protein 48 isoform X1 [Cucumis melo]3.24e-156100Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD
        ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRLDNRRRI
        KIQSSSEHLQAGPASKKSRLDNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRLDNRRRI

XP_011649485.1 RNA-binding protein 48 isoform X1 [Cucumis sativus]8.22e-14493.83Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MP FRDE LAVRAYTVCDESRYLIVRNVPALGCGD LHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLE-NRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKL
        ESL+DTKEKLEVRRREVLARLDSGRPRG+AVSSTTAKLTN SRS+YTL+QKNSLE +RNYGDAALIS+PHVSQ+TRVSSDQDYFASESMNQTVHLVREKL
Subjt:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLE-NRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKL

Query:  DKIQSSSEHLQAGPASKKSRLDNRRRI
        DKIQSSSEHLQAGPASKKSR+DNRRRI
Subjt:  DKIQSSSEHLQAGPASKKSRLDNRRRI

XP_022997621.1 RNA-binding protein 48 isoform X1 [Cucurbita maxima]2.58e-13788.05Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MPR+ +EP AVR YT+CDESRYLIVRNVPALGCGD L KLFSSYGNLEECKPMDAEECDEFTDVYFVKFH V+NARFAKRKLDEFVFLGNRLQVSYAP+F
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD
        ESL+DTKEKLEVRRREVLARLDSGRPRGSAV+S T K TNPS S+YTLEQKNSLE RNYGDAAL S+PHVSQ+TRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRLDNRRRI
        KIQS SEHL+AGP SK+SR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRLDNRRRI

XP_038884635.1 RNA-binding protein 48 isoform X1 [Benincasa hispida]8.42e-14392.04Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MPRF DEP AVR YTVCDESRYL+VRNVPALGCGD L KLFSSYGNLEECKPMDAEECDEFTDVYFVKFH VT+ARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD
        ESL+DT+EKLEVRRREVLARLDSGRPRGSAVSSTTAK TNPSRS+YTLEQKNSLE RNYGD  LIS+PHVSQ+TRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRLDNRRRI
        KIQSSSEHLQAGPASKKSR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRLDNRRRI

TrEMBL top hitse value%identityAlignment
A0A0A0LQL2 RNA-binding protein 485.3e-11494.25Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MP FRDE LAVRAYTVCDESRYLIVRNVPALGCGD LHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD
        ESL+DTKEKLEVRRREVLARLDSGRPRG+AVSSTTAKLTN SRS+YTL+QKNSLE RNYGDAALIS+PHVSQ+TRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRLDNRRRI
        KIQSSSEHLQAGPASKKSR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRLDNRRRI

A0A1S3BA34 RNA-binding protein 489.1e-122100Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD
        ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRLDNRRRI
        KIQSSSEHLQAGPASKKSRLDNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRLDNRRRI

A0A5A7V5K4 RNA-binding protein 489.1e-122100Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD
        ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRLDNRRRI
        KIQSSSEHLQAGPASKKSRLDNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRLDNRRRI

A0A6J1HAQ6 RNA-binding protein 483.1e-10687.17Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MPR+ +EP AVR YT+CDESRYLIVRNVPALGCGD L KLFSSYGNLEECKPMDAEECDEFTDVYFVKFH V+NARFAKRKLDEFVFLGNRLQVSYAP+F
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD
        ESL+DTKEKLEVRRREVLARL+SGRPRGSAV+S T K TNPS S+YTLEQK+SLE RNYGDAAL S+PHVSQ+TRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRLDNRRRI
        KIQS SEHL+AGP SK+SR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRLDNRRRI

A0A6J1K7Z4 RNA-binding protein 482.2e-10788.05Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MPR+ +EP AVR YT+CDESRYLIVRNVPALGCGD L KLFSSYGNLEECKPMDAEECDEFTDVYFVKFH V+NARFAKRKLDEFVFLGNRLQVSYAP+F
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD
        ESL+DTKEKLEVRRREVLARLDSGRPRGSAV+S T K TNPS S+YTLEQKNSLE RNYGDAAL S+PHVSQ+TRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRLDNRRRI
        KIQS SEHL+AGP SK+SR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRLDNRRRI

SwissProt top hitse value%identityAlignment
A4FVJ7 RNA-binding protein 488.4e-2436.67Show/hide
Query:  PRFRD--EPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPE
        P++R+     AV+ YT+  ESRYL+V+ VPA+G    L +LF+ YG +EE +P+D    ++FT+VY ++F  +T+AR AKR  DE  F G +L V YAPE
Subjt:  PRFRD--EPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPE

Query:  FESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSD
        +E++ +TK+KL+ RRR V           +  S   AKL +  ++    E  +S + R      +  +P  ++   V+SD
Subjt:  FESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSD

A6QPE1 RNA-binding protein 482.5e-2043.64Show/hide
Query:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTK
        P AV+ YT+  ES YL+++ VPA+G    L + F+ YG +E+   +D    ++FT+VY +KF ++ +AR AKRK+DE  F G  L V YAPEFE++ +T+
Subjt:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTK

Query:  EKLEVRRREV
        +KL  R   V
Subjt:  EKLEVRRREV

Q561R3 RNA-binding protein 488.7e-2143.93Show/hide
Query:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTK
        P AV+ YT+  ES+YL+++ VPA+G    L + F+ YG +E+   +D    ++FT+VY +KF  + +AR AK+K+DE  F G  L V YAPEFE++ +T+
Subjt:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTK

Query:  EKLEVRR
        +KLE R+
Subjt:  EKLEVRR

Q5R4U2 RNA-binding protein 487.9e-2244.14Show/hide
Query:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTK
        P AV+ YT+  ES+YL+++ VPA+G    L + F+ YG +E+   +D    ++FT+VY +KF ++ +AR AKRK+DE  F G  L V YAPEFE++ +T+
Subjt:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTK

Query:  EKLEVRRREVL
        +KL+VR+  V+
Subjt:  EKLEVRRREVL

Q5RL73 RNA-binding protein 483.0e-2143.24Show/hide
Query:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTK
        P AV+ YT+  ES+YL+++ VPA+G    L + F+ YG +E+   +D    ++FT+VY +KF ++ +AR AKRK+DE  F G  L V YAPEFE++ +T+
Subjt:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTK

Query:  EKLEVRRREVL
        +KL++R+  V+
Subjt:  EKLEVRRREVL

Arabidopsis top hitse value%identityAlignment
AT2G27790.1 RNA-binding (RRM/RBD/RNP motifs) family protein9.4e-6352.99Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        M R++DE  AVR YTVCDESRY+IVRNVPALGCGD L +LF +YG +EECKPMDAE+C EFTDVY++KF  +TNARFAKRKLDE  FLGNRLQ+SYAPE+
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNP--SRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREK
        E++ DTK+KLE RR+EVLARL+   P+    +S   KL  P  ++++    Q+  +E + +   A         +TRVSSDQ+YFAS SMNQTV  VREK
Subjt:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNP--SRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREK

Query:  LDKIQSSSEHLQAGPAS-----------------------KKSRLDNRRRI
        L+KI+ S    +  P+S                       K++R+DNRRRI
Subjt:  LDKIQSSSEHLQAGPAS-----------------------KKSRLDNRRRI

AT2G27790.2 RNA-binding (RRM/RBD/RNP motifs) family protein9.4e-6352.99Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        M R++DE  AVR YTVCDESRY+IVRNVPALGCGD L +LF +YG +EECKPMDAE+C EFTDVY++KF  +TNARFAKRKLDE  FLGNRLQ+SYAPE+
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNP--SRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREK
        E++ DTK+KLE RR+EVLARL+   P+    +S   KL  P  ++++    Q+  +E + +   A         +TRVSSDQ+YFAS SMNQTV  VREK
Subjt:  ESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNP--SRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREK

Query:  LDKIQSSSEHLQAGPAS-----------------------KKSRLDNRRRI
        L+KI+ S    +  P+S                       K++R+DNRRRI
Subjt:  LDKIQSSSEHLQAGPAS-----------------------KKSRLDNRRRI

AT5G27300.1 pentatricopeptide (PPR) repeat-containing protein2.7e-5454.3Show/hide
Query:  TVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRR
        +VCDESRY+IVRNVPALGCGD L +LF +YG +EECKPMDAE+C EFTDVY++KF  +TNA    RKLDE  FLGNRLQ+SYAPE+ES+ DTKEKLE RR
Subjt:  TVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRR

Query:  REVLARLDSGRPRGSAVSSTTAKLTNPS---RSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQA
        +EVLARL+   P  +  +S   KL  P+     N++  ++      + G+A          +TRVSS Q+YFAS SMNQ V  VREKL+KI+ S    + 
Subjt:  REVLARLDSGRPRGSAVSSTTAKLTNPS---RSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQA

Query:  GPAS------KKSRLDNRRRI
         P+S      K++R+DNRRRI
Subjt:  GPAS------KKSRLDNRRRI

AT5G27300.2 pentatricopeptide (PPR) repeat-containing protein2.7e-5454.3Show/hide
Query:  TVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRR
        +VCDESRY+IVRNVPALGCGD L +LF +YG +EECKPMDAE+C EFTDVY++KF  +TNA    RKLDE  FLGNRLQ+SYAPE+ES+ DTKEKLE RR
Subjt:  TVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRR

Query:  REVLARLDSGRPRGSAVSSTTAKLTNPS---RSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQA
        +EVLARL+   P  +  +S   KL  P+     N++  ++      + G+A          +TRVSS Q+YFAS SMNQ V  VREKL+KI+ S    + 
Subjt:  REVLARLDSGRPRGSAVSSTTAKLTNPS---RSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQA

Query:  GPAS------KKSRLDNRRRI
         P+S      K++R+DNRRRI
Subjt:  GPAS------KKSRLDNRRRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGTTTTAGAGACGAGCCCCTTGCGGTTCGCGCCTATACAGTTTGCGATGAGTCAAGGTATTTGATTGTGAGGAACGTCCCAGCCTTGGGTTGTGGAGATGGCTT
GCACAAACTGTTCTCCTCCTACGGGAACCTTGAAGAGTGTAAACCCATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTTCATTCGGTCACCA
ATGCCAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTCCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGGTTGATACAAAGGAAAAGCTA
GAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTCTGGCAGACCAAGAGGATCTGCAGTTAGTTCAACAACCGCAAAGCTTACAAATCCTTCTCGCTCTAATTATAC
TCTTGAACAGAAGAACTCTCTTGAAAATAGGAATTATGGAGATGCAGCACTCATTTCCAGTCCCCATGTTTCTCAAATGACAAGAGTTTCCTCTGACCAGGATTACTTCG
CATCCGAATCTATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCAGCGAGCAAGAAATCACGTCTG
GACAATAGGAGGAGAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATTCAACCGACAAACTTTATATTTCGTATATCAATAAACTGATATACTAACTGCATAGTGTCAACTAACCTATGTATTCGTTTATAATTTTGGAATTTTTTTGTGTAGTT
GCCCCAAATTCCATCTTTATCCATGGATCCCTTATTCCTCCGATTGAGAACCCATTTTTCTGCTAAATCATGACAAAAATCTCGGGGGAACGATCGGGAGAAGCATCTCG
AGTTGGACGCCGTAGCCTCAAACCAAGCATCTGATCTGAATTTTACGACAAATCCGACCCACAGGTCTTGATGAGTTTCAATTTGTGAGTGAAACAACTAAAGAGCTACA
ACGACTGCTACTTAAAAAAAGGACGCTCAATCCGAAAGGCAAGCTAGGGCATTCGAATCAGTTGAGGGTTTTGCCGGAACCCTTGTGTGCTTAATTTGTGATTTTGCCAA
TTGAGGTAACTAAACGGTTTAACTTCAAGAAAACAACGTAAACAACTATGGACAAATGTAGAAAAAGGGCGGGGTTAGATTAGATAACTGGAAATTGGAAATCGGAAATC
GAAATTGAGAGAAAGCGGGTTGTTGGAGGATGCCTCGTTTTAGAGACGAGCCCCTTGCGGTTCGCGCCTATACAGTTTGCGATGAGTCAAGGTATTTGATTGTGAGGAAC
GTCCCAGCCTTGGGTTGTGGAGATGGCTTGCACAAACTGTTCTCCTCCTACGGGAACCTTGAAGAGTGTAAACCCATGGATGCAGAAGAATGTGATGAATTCACAGACGT
TTATTTTGTCAAATTTCATTCGGTCACCAATGCCAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTCCAAGTCTCTTATGCGCCTGAGTTTG
AAAGCTTGGTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTCTGGCAGACCAAGAGGATCTGCAGTTAGTTCAACAACCGCAAAG
CTTACAAATCCTTCTCGCTCTAATTATACTCTTGAACAGAAGAACTCTCTTGAAAATAGGAATTATGGAGATGCAGCACTCATTTCCAGTCCCCATGTTTCTCAAATGAC
AAGAGTTTCCTCTGACCAGGATTACTTCGCATCCGAATCTATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAAGCAGCGAACATCTGCAAG
CTGGACCAGCGAGCAAGAAATCACGTCTGGACAATAGGAGGAGAATCTAATGCTAGCTGGCCTCTTTATAGAGACGGTTAGTAGGTGTCTCAACGTTGTATCAAAAGCTA
TTTTGACATATCGCATACGCCGATTTGCGGTGTACAAATTGAACTGTTTGGCCTTTTATTTCAAAGGTGAAAAAGGAATAGTGCATGCAACAAAGTTCTGTAGAGGAGTG
TTTTATTGCCATCACTATAAGCGCTTATTGCTATAATCAGTTCTCACACAAGGATCGTTATGGTAGATTTATAGTATACCTTTGTAATTACTTTTTACCAGAACTCCATT
CGACTTATTAATCACTCCGGGAAGATGGATGGAATAACTTCTCC
Protein sequenceShow/hide protein sequence
MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKL
EVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRL
DNRRRI