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IVF0011329 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011329
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptiontRNA_int_end_N2 domain-containing protein
Genome locationchr04:27112398..27114796
RNA-Seq ExpressionIVF0011329
SyntenyIVF0011329
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0008033 - tRNA processing (biological process)
GO:0005643 - nuclear pore (cellular component)
GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domainsIPR024336 - tRNA-splicing endonuclease, subunit Sen54, N-terminal
IPR024337 - tRNA-splicing endonuclease, subunit Sen54


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028441.1 tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosperma]2.14e-10562.41Show/hide
Query:  MEATDWESSSGGLV------------------------------HASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDH
        MEATDWE SSGG                                HASTARWND MG+ EVLENKGSLWTT+GIV CGKIYCSIEETLF  E+GAL +LDH
Subjt:  MEATDWESSSGGLV------------------------------HASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDH

Query:  DNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKHN------------DVSSPSSIENKRAR----EDEKLISELLDTTRLDEVTPIFDVFL
        DNSSLSLKDVYKKVAEGK   C+WEQFEVYRH KSL +IVGKH             D+SS SSIENK +     EDEK I EL+D  +L+EVTPIFDV+L
Subjt:  DNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKHN------------DVSSPSSIENKRAR----EDEKLISELLDTTRLDEVTPIFDVFL

Query:  PHNKFRKSSPGDPNFMVCLTR--------------TSRGIPMKYCHVEHGRVCFFSFDNVQLPILP
        PH+KFRKSSPGDPNFMVCLTR               S GIPMKYCHVEHGRVCFFSFD V+LP+LP
Subjt:  PHNKFRKSSPGDPNFMVCLTR--------------TSRGIPMKYCHVEHGRVCFFSFDNVQLPILP

XP_011653726.1 uncharacterized protein LOC101210680 isoform X2 [Cucumis sativus]2.41e-10763.43Show/hide
Query:  MEATDWESSSGGLV--------------------------------HASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRIL
        MEAT+WESSSGG                                  HASTARWND+MG+ EVLENKGSLWTTTGIV CGKIYCSIEETLF  E+GAL +L
Subjt:  MEATDWESSSGGLV--------------------------------HASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRIL

Query:  DHDNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKHN------------DVSSPSSIENKRARE----DEKLISELLDTTRLDEVTPIFDV
        DHDNSSLSLKDVYKKVAEG+  G LWEQFEVYRH KSL +IVGKH             D+SSPSS ENK A +    DE+ I  LL+  +LDEVTPIFDV
Subjt:  DHDNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKHN------------DVSSPSSIENKRARE----DEKLISELLDTTRLDEVTPIFDV

Query:  FLPHNKFRKSSPGDPNFMVCLTR--------------TSRGIPMKYCHVEHGRVCFFSFDNVQLPILP
        FLPHNKFRKSSPGDPNFMVCLTR              TSRGIPMKYCHVEHGRVCFFSFD V+LP+LP
Subjt:  FLPHNKFRKSSPGDPNFMVCLTR--------------TSRGIPMKYCHVEHGRVCFFSFDNVQLPILP

XP_022156818.1 uncharacterized protein LOC111023660 [Momordica charantia]1.51e-10562.41Show/hide
Query:  MEATDWESSSGGLV------------------------------HASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDH
        MEATDWESSSGG                                HASTARWND+MG+ EVLEN+GSLWTTTGIV CGKIYCS EETLF  E+GAL +LDH
Subjt:  MEATDWESSSGGLV------------------------------HASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDH

Query:  DNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKH------------NDVSSPSSIENKRA----REDEKLISELLDTTRLDEVTPIFDVFL
        DNSSLSLKDVYKKVAEGK  GCLWEQFEVYRH KSL FIVGKH            +D+S  SSIEN+ A     +DE+ ISELL + +LD+V PIFDVFL
Subjt:  DNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKH------------NDVSSPSSIENKRA----REDEKLISELLDTTRLDEVTPIFDVFL

Query:  PHNKFRKSSPGDPNFMVCLTR--------------TSRGIPMKYCHVEHGRVCFFSFDNVQLPILP
        PH+KFRKSSPGDPNFMVCLTR              TSRGI +KYCHVEHGRVCFFSFD ++LP+LP
Subjt:  PHNKFRKSSPGDPNFMVCLTR--------------TSRGIPMKYCHVEHGRVCFFSFDNVQLPILP

XP_022940787.1 tRNA-splicing endonuclease subunit Sen54 [Cucurbita moschata]2.14e-10562.41Show/hide
Query:  MEATDWESSSGGLV------------------------------HASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDH
        MEATDWE SSGG                                HASTARWND MG+ EVLENKGSLWTT+GIV CGKIYCSIEETLF  E+GAL +LDH
Subjt:  MEATDWESSSGGLV------------------------------HASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDH

Query:  DNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKHN------------DVSSPSSIENKRAR----EDEKLISELLDTTRLDEVTPIFDVFL
        DNSSLSLKDVYKKVAEGK   C+WEQFEVYRH KSL +IVGKH             D+SS SSIENK +     EDEK I EL+D  +L+EVTPIFDV+L
Subjt:  DNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKHN------------DVSSPSSIENKRAR----EDEKLISELLDTTRLDEVTPIFDVFL

Query:  PHNKFRKSSPGDPNFMVCLTR--------------TSRGIPMKYCHVEHGRVCFFSFDNVQLPILP
        PH+KFRKSSPGDPNFMVCLTR               S GIPMKYCHVEHGRVCFFSFD V+LP+LP
Subjt:  PHNKFRKSSPGDPNFMVCLTR--------------TSRGIPMKYCHVEHGRVCFFSFDNVQLPILP

XP_038883355.1 uncharacterized protein LOC120074337 [Benincasa hispida]4.11e-11065.41Show/hide
Query:  MEATDWESSSGGLV------------------------------HASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDH
        MEA DWESSSGG                                HASTARWNDRMG+ EVLENKGSLWTTTGIV CGKIYCSIEETLF  E+GAL +LDH
Subjt:  MEATDWESSSGGLV------------------------------HASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDH

Query:  DNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKH------------NDVSSPSSIENKRAR----EDEKLISELLDTTRLDEVTPIFDVFL
        DNSSLSL+DVYKK+AEGK  GCLWEQFEVYRH KSL FIVGKH            +++SSPSSIENK A     EDE+ ISELLD  +L+EV PIFDVFL
Subjt:  DNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKH------------NDVSSPSSIENKRAR----EDEKLISELLDTTRLDEVTPIFDVFL

Query:  PHNKFRKSSPGDPNFMVCLTR--------------TSRGIPMKYCHVEHGRVCFFSFDNVQLPILP
        PHNKFRKSSPGDPNFMV LTR              TSRGIPMKYCHVEHGRVCFFSFD V+LPILP
Subjt:  PHNKFRKSSPGDPNFMVCLTR--------------TSRGIPMKYCHVEHGRVCFFSFDNVQLPILP

TrEMBL top hitse value%identityAlignment
A0A0A0KXV5 tRNA_int_end_N2 domain-containing protein8.9e-8463.43Show/hide
Query:  MEATDWESSSGGL--------------------------------VHASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRIL
        MEAT+WESSSGG                                  HASTARWND+MG+ EVLENKGSLWTTTGIV CGKIYCSIEETLF  E+GAL +L
Subjt:  MEATDWESSSGGL--------------------------------VHASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRIL

Query:  DHDNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKHN------------DVSSPSSIENKRA----REDEKLISELLDTTRLDEVTPIFDV
        DHDNSSLSLKDVYKKVAEG+  G LWEQFEVYRH KSL +IVGKH             D+SSPSS ENK A     +DE+ I  LL+  +LDEVTPIFDV
Subjt:  DHDNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKHN------------DVSSPSSIENKRA----REDEKLISELLDTTRLDEVTPIFDV

Query:  FLPHNKFRKSSPGDPNFMVCLT--------------RTSRGIPMKYCHVEHGRVCFFSFDNVQLPILP
        FLPHNKFRKSSPGDPNFMVCLT              RTSRGIPMKYCHVEHGRVCFFSFD V+LP+LP
Subjt:  FLPHNKFRKSSPGDPNFMVCLT--------------RTSRGIPMKYCHVEHGRVCFFSFDNVQLPILP

A0A6J1DRN3 uncharacterized protein LOC1110236602.2e-8262.41Show/hide
Query:  MEATDWESSSGGL------------------------------VHASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDH
        MEATDWESSSGG                                HASTARWND+MG+ EVLEN+GSLWTTTGIV CGKIYCS EETLF  E+GAL +LDH
Subjt:  MEATDWESSSGGL------------------------------VHASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDH

Query:  DNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKH------------NDVSSPSSIENKRA----REDEKLISELLDTTRLDEVTPIFDVFL
        DNSSLSLKDVYKKVAEG K GCLWEQFEVYRH KSL FIVGKH            +D+S  SSIEN+ A     +DE+ ISELL + +LD+V PIFDVFL
Subjt:  DNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKH------------NDVSSPSSIENKRA----REDEKLISELLDTTRLDEVTPIFDVFL

Query:  PHNKFRKSSPGDPNFMVCLT--------------RTSRGIPMKYCHVEHGRVCFFSFDNVQLPILP
        PH+KFRKSSPGDPNFMVCLT              RTSRGI +KYCHVEHGRVCFFSFD ++LP+LP
Subjt:  PHNKFRKSSPGDPNFMVCLT--------------RTSRGIPMKYCHVEHGRVCFFSFDNVQLPILP

A0A6J1FKK4 tRNA-splicing endonuclease subunit Sen541.6e-8069.82Show/hide
Query:  HASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDHDNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKH-
        HASTARWND MG+ EVLENKGSLWTT+GIV CGKIYCSIEETLF  E+GAL +LDHDNSSLSLKDVYKKVAEGK   C+WEQFEVYRH KSL +IVGKH 
Subjt:  HASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDHDNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKH-

Query:  -----------NDVSSPSSIENKRA----REDEKLISELLDTTRLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLT--------------RTSRGIPMKY
                    D+SS SSIENK +     EDEK I EL+D  +L+EVTPIFDV+LPH+KFRKSSPGDPNFMVCLT              R S GIPMKY
Subjt:  -----------NDVSSPSSIENKRA----REDEKLISELLDTTRLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLT--------------RTSRGIPMKY

Query:  CHVEHGRVCFFSFDNVQLPILP
        CHVEHGRVCFFSFD V+LP+LP
Subjt:  CHVEHGRVCFFSFDNVQLPILP

A0A6J1I8D9 tRNA-splicing endonuclease subunit Sen54 isoform X31.0e-7969.37Show/hide
Query:  HASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDHDNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKH-
        HASTARWND MG+ EVLENKGSLWTT+GIV CGKIYCSIEETLF  E+GAL +LDHDNSSLSLKDVYKKVAEGK   C+WEQFEVYRH KSL +IVGKH 
Subjt:  HASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDHDNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKH-

Query:  -----------NDVSSPSSIENKRA----REDEKLISELLDTTRLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLT--------------RTSRGIPMKY
                    D+SS SSIENK +     EDEK I ELL+  +L+E+TPIFDV+LPH+KFRKSSPGDPNFMVCLT              R S GIPMKY
Subjt:  -----------NDVSSPSSIENKRA----REDEKLISELLDTTRLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLT--------------RTSRGIPMKY

Query:  CHVEHGRVCFFSFDNVQLPILP
        CHVEHGRVCFFSFD V+LP+LP
Subjt:  CHVEHGRVCFFSFDNVQLPILP

A0A6J1ICR8 tRNA-splicing endonuclease subunit Sen54 isoform X22.4e-8162.03Show/hide
Query:  MEATDWESSSGGL------------------------------VHASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDH
        MEATDWE SSGG                                HASTARWND MG+ EVLENKGSLWTT+GIV CGKIYCSIEETLF  E+GAL +LDH
Subjt:  MEATDWESSSGGL------------------------------VHASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDH

Query:  DNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKH------------NDVSSPSSIENKRA----REDEKLISELLDTTRLDEVTPIFDVFL
        DNSSLSLKDVYKKVAEGK   C+WEQFEVYRH KSL +IVGKH             D+SS SSIENK +     EDEK I ELL+  +L+E+TPIFDV+L
Subjt:  DNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKH------------NDVSSPSSIENKRA----REDEKLISELLDTTRLDEVTPIFDVFL

Query:  PHNKFRKSSPGDPNFMVCLT--------------RTSRGIPMKYCHVEHGRVCFFSFDNVQLPILP
        PH+KFRKSSPGDPNFMVCLT              R S GIPMKYCHVEHGRVCFFSFD V+LP+LP
Subjt:  PHNKFRKSSPGDPNFMVCLT--------------RTSRGIPMKYCHVEHGRVCFFSFDNVQLPILP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G02370.1 unknown protein2.1e-3242.24Show/hide
Query:  ITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRIL-DHDNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKHN-DVSSPSSIEN
        + EV   +G LWTTTGI+  GK YC IEE L+  EIG L++L D D+  +SLKD+Y ++AEG K GC WE +EVYR+ K L +I+G+H    ++  ++  
Subjt:  ITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRIL-DHDNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKHN-DVSSPSSIEN

Query:  KRAREDEKL-----------ISELLDTTRLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLT
          + EDE L           +++LL    + +  P+FDV+LP+++F+KSSPG+P+F+ C +
Subjt:  KRAREDEKL-----------ISELLDTTRLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLT

AT3G02370.2 unknown protein1.2e-3242.07Show/hide
Query:  ITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRIL-DHDNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKHN-DVSSPSSIEN
        + EV   +G LWTTTGI+  GK YC IEE L+  EIG L++L D D+  +SLKD+Y ++AEG K GC WE +EVYR+ K L +I+G+H    ++  ++  
Subjt:  ITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRIL-DHDNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKHN-DVSSPSSIEN

Query:  KRAREDEKL-----------ISELLDTTRLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLTRTS
          + EDE L           +++LL    + +  P+FDV+LP+++F+KSSPG+P+F+ C +  S
Subjt:  KRAREDEKL-----------ISELLDTTRLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLTRTS

AT3G57360.1 unknown protein1.3e-4237.01Show/hide
Query:  MEATDWESSS-----GGL--------------------VHASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRIL-DHDNSS
        ME  DWE+SS     GG                     V +S ARW   +G+ EV   +G LWTTTGI+  GK YC IEE L+  EIG L+IL + D+  
Subjt:  MEATDWESSS-----GGL--------------------VHASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRIL-DHDNSS

Query:  LSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKH------NDVSSPSSIENK----RAREDEKLISELLDTTRLDEVTPIFDVFLPHNKFRKSSP
        + LKD+Y+K+AE +K GC WE +EVYR+ K L +I+G+H       D + P+  E          D   +++LL   ++ +   +FDV+LP+++F+KSSP
Subjt:  LSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIVGKH------NDVSSPSSIENK----RAREDEKLISELLDTTRLDEVTPIFDVFLPHNKFRKSSP

Query:  GDPNFMVCLTRTSR-------------GIPMKYCHVEHGRVCFFSFDNVQLPIL
        G+P+F+ C +  S                P+ +CH+  GR  FFSF ++ LP+L
Subjt:  GDPNFMVCLTRTSR-------------GIPMKYCHVEHGRVCFFSFDNVQLPIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCTACAGATTGGGAAAGCTCATCGGGAGGGCTAGTGCATGCTTCAACTGCTCGATGGAATGATCGAATGGGGATAACAGAAGTTTTAGAGAACAAGGGCAGCCT
TTGGACGACGACTGGCATTGTAGGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCCTTTTGAAATTGGGGCTTTACGTATTTTGGATCATGATAATTCAA
GTCTCTCTTTGAAAGATGTATATAAGAAAGTAGCTGAAGGTAAAAAAAGGGGGTGTCTTTGGGAGCAGTTTGAGGTTTATAGGCACTTCAAATCTCTTGTTTTCATTGTT
GGAAAGCATAATGACGTTTCATCTCCAAGTTCTATTGAAAACAAAAGAGCAAGAGAAGATGAGAAGTTGATCTCTGAACTATTAGATACCACTCGGCTCGATGAAGTGAC
ACCCATTTTTGATGTTTTTCTTCCACATAACAAATTTAGAAAGTCTTCTCCTGGTGACCCAAATTTTATGGTCTGCTTGACTAGAACATCTAGAGGCATTCCAATGAAAT
ATTGTCATGTTGAACATGGACGTGTCTGTTTCTTTTCGTTTGATAATGTGCAGCTTCCTATCTTACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCTACAGATTGGGAAAGCTCATCGGGAGGGCTAGTGCATGCTTCAACTGCTCGATGGAATGATCGAATGGGGATAACAGAAGTTTTAGAGAACAAGGGCAGCCT
TTGGACGACGACTGGCATTGTAGGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCCTTTTGAAATTGGGGCTTTACGTATTTTGGATCATGATAATTCAA
GTCTCTCTTTGAAAGATGTATATAAGAAAGTAGCTGAAGGTAAAAAAAGGGGGTGTCTTTGGGAGCAGTTTGAGGTTTATAGGCACTTCAAATCTCTTGTTTTCATTGTT
GGAAAGCATAATGACGTTTCATCTCCAAGTTCTATTGAAAACAAAAGAGCAAGAGAAGATGAGAAGTTGATCTCTGAACTATTAGATACCACTCGGCTCGATGAAGTGAC
ACCCATTTTTGATGTTTTTCTTCCACATAACAAATTTAGAAAGTCTTCTCCTGGTGACCCAAATTTTATGGTCTGCTTGACTAGAACATCTAGAGGCATTCCAATGAAAT
ATTGTCATGTTGAACATGGACGTGTCTGTTTCTTTTCGTTTGATAATGTGCAGCTTCCTATCTTACCTTGA
Protein sequenceShow/hide protein sequence
MEATDWESSSGGLVHASTARWNDRMGITEVLENKGSLWTTTGIVGCGKIYCSIEETLFPFEIGALRILDHDNSSLSLKDVYKKVAEGKKRGCLWEQFEVYRHFKSLVFIV
GKHNDVSSPSSIENKRAREDEKLISELLDTTRLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLTRTSRGIPMKYCHVEHGRVCFFSFDNVQLPILP