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IVF0011365 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011365
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr04:12222793..12223056
RNA-Seq ExpressionIVF0011365
SyntenyIVF0011365
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037926.1 retrotransposon protein [Cucumis melo var. makuwa]9.20e-3295Show/hide
Query:  MGRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLD
        MGRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQT   D
Subjt:  MGRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLD
KAA0042476.1 retrotransposon protein [Cucumis melo var. makuwa]4.65e-2260Show/hide
Query:  GRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASGSVRLKSYTY
        G F   F ++G     GM  LT  MGTRSSHPC  RGLT  RRMYAHH+LL+HQ VG ++ADRRERG+AS   RLKSY +
Subjt:  GRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASGSVRLKSYTY
KAA0049852.1 retrotransposon protein [Cucumis melo var. makuwa]9.55e-2463.75Show/hide
Query:  GRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASGSVRLKSYTY
        GRF + F +VG     GMR LT  MGTRSSH C  RGLTC RRMY HH+LL+   VGLDRADRR RGEAS   RLKSY +
Subjt:  GRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASGSVRLKSYTY
KAA0051048.1 retrotransposon protein [Cucumis melo var. makuwa]5.01e-2665.82Show/hide
Query:  MGRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASGSVRLKSY
        M RF   F ++GSNE +GMR LT  MG RSSH C   GLTC  RMYAHH+LL+HQ VG +RADRRERGEAS   RLKSY
Subjt:  MGRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASGSVRLKSY
TYK21089.1 retrotransposon protein [Cucumis melo var. makuwa]2.45e-2064.79Show/hide
Query:  GRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASG
        GRF +IF +V  NEP     LT  MGTRSS+PC  RGLTC RRMYAHH+LL+ Q VG D+ADRRE+G+ASG
Subjt:  GRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASG
TrEMBL top hitse value%identityAlignment
A0A5A7T6W3 Retrotransposon protein3.0e-2593.44Show/hide
Query:  MGRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDR
        MGRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQT   D+
Subjt:  MGRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDR
A0A5A7TKK2 Retrotransposon protein6.8e-1760Show/hide
Query:  GRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASGSVRLKSYTY
        G F   F ++G     GM  LT  MGTRSSHPC  RGLT  RRMYAHH+LL+HQ VG ++ADRRERG+AS   RLKSY +
Subjt:  GRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASGSVRLKSYTY
A0A5A7VSX7 Retrotransposon protein2.0e-1664.79Show/hide
Query:  GRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASG
        GRF +IF +V  NEP     LT  MGTRSS+PC  RGLTC RRMYAHH+LL+ Q VG D+ADRRE+G+ASG
Subjt:  GRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASG
A0A5D3CBV0 Retrotransposon protein3.6e-1863.75Show/hide
Query:  GRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASGSVRLKSYTY
        GRF + F +VG     GMR LT  MGTRSSH C  RGLTC RRMY HH+LL+   VGLDRADRR RGEAS   RLKSY +
Subjt:  GRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASGSVRLKSYTY
A0A5D3CHZ6 Retrotransposon protein8.6e-2065.82Show/hide
Query:  MGRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASGSVRLKSY
        M RF   F ++GSNE +GMR LT  MG RSSH C   GLTC  RMYAHH+LL+HQ VG +RADRRERGEAS   RLKSY
Subjt:  MGRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASGSVRLKSY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCGCTTTACTGAGATATTTACCAACGTTGGGTCTAACGAGCCTATTGGTATGAGGGATTTGACACGCCATATGGGAACGAGGAGTTCCCATCCATGTATATTCAG
GGGATTGACATGTACTAGGAGGATGTACGCTCATCACAACCTTCTCTCGCATCAGACGGTAGGGTTAGATAGAGCGGATCGAAGAGAAAGAGGGGAAGCCAGTGGGAGTG
TGAGATTGAAGTCATACACATATGGCCCTCGAGTGTACAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCGCTTTACTGAGATATTTACCAACGTTGGGTCTAACGAGCCTATTGGTATGAGGGATTTGACACGCCATATGGGAACGAGGAGTTCCCATCCATGTATATTCAG
GGGATTGACATGTACTAGGAGGATGTACGCTCATCACAACCTTCTCTCGCATCAGACGGTAGGGTTAGATAGAGCGGATCGAAGAGAAAGAGGGGAAGCCAGTGGGAGTG
TGAGATTGAAGTCATACACATATGGCCCTCGAGTGTACAAATGA
Protein sequenceShow/hide protein sequence
MGRFTEIFTNVGSNEPIGMRDLTRHMGTRSSHPCIFRGLTCTRRMYAHHNLLSHQTVGLDRADRRERGEASGSVRLKSYTYGPRVYK