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IVF0011387 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011387
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCollagen triple helix repeat protein
Genome locationchr12:800153..800401
RNA-Seq ExpressionIVF0011387
SyntenyIVF0011387
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051389.1 Collagen triple helix repeat protein [Cucumis melo var. makuwa]1.34e-1081.58Show/hide
Query:  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNNPTKRNS
        MDP KRK QTKTMDPTKRNN+AKTM+PTKR+ PTKRN+
Subjt:  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNNPTKRNS
KAA0060038.1 hypothetical protein E6C27_scaffold340G00860 [Cucumis melo var. makuwa]1.07e-1480Show/hide
Query:  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNN------PTKRNSLGPDLK
        MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRN+      PTKRNS GPD +
Subjt:  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNN------PTKRNSLGPDLK
TYK01567.1 putative transposable element-related protein [Cucumis melo var. makuwa]6.71e-0485.71Show/hide
Query:  MDPTKRNNQAKTMDPTKRNNPTKRNSLG
        MDPTKRNNQAKTMDPTKRN+  KR SLG
Subjt:  MDPTKRNNQAKTMDPTKRNNPTKRNSLG
TYK22248.1 Collagen triple helix repeat protein [Cucumis melo var. makuwa]2.32e-1184.21Show/hide
Query:  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNNPTKRNS
        MDP KRK QTKTMDPTKRNN+AKTM+PTKRN PTKRN+
Subjt:  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNNPTKRNS
TrEMBL top hitse value%identityAlignment
A0A5A7UD84 Collagen triple helix repeat protein1.0e-0681.58Show/hide
Query:  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNNPTKRNS
        MDP KRK QTKTMDPTKRNN+AKTM+PTKR+ PTKRN+
Subjt:  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNNPTKRNS
A0A5A7UXT0 Uncharacterized protein7.6e-1080Show/hide
Query:  MDPVKRKSQTKTMDPTKRNNQAKTMDP------TKRNNPTKRNSLGPDLK
        MDPVKRKSQTKTMDPTKRNNQAKTMDP      TKRN+PTKRNS GPD +
Subjt:  MDPVKRKSQTKTMDPTKRNNQAKTMDP------TKRNNPTKRNSLGPDLK
A0A5D3DFL7 Collagen triple helix repeat protein2.7e-0784.21Show/hide
Query:  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNNPTKRNS
        MDP KRK QTKTMDPTKRNN+AKTM+PTKRN PTKRN+
Subjt:  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNNPTKRNS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCAGTGAAGAGGAAGAGTCAGACGAAAACTATGGATCCGACAAAGAGGAACAATCAAGCAAAAACTATGGATCCGACGAAGAGGAACAATCCAACTAAGAGGAA
CAGTCTGGGTCCGGATTTGAAAGAGGAAGATGATGATTATTTTGGGAAGACTATGAAGATAAGAGGAAAAGAAAACCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCAGTGAAGAGGAAGAGTCAGACGAAAACTATGGATCCGACAAAGAGGAACAATCAAGCAAAAACTATGGATCCGACGAAGAGGAACAATCCAACTAAGAGGAA
CAGTCTGGGTCCGGATTTGAAAGAGGAAGATGATGATTATTTTGGGAAGACTATGAAGATAAGAGGAAAAGAAAACCAATAA
Protein sequenceShow/hide protein sequence
MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNNPTKRNSLGPDLKEEDDDYFGKTMKIRGKENQ