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IVF0011464 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011464
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr04:21895653..21896117
RNA-Seq ExpressionIVF0011464
SyntenyIVF0011464
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026022.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.39e-3678.57Show/hide
Query:  MLPDTFSQVIGRKASSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRPWV
        MLPD FS  IGR+A+SL GEL CDPKRSKRWPMLPTSG+ SS  RNH KCTC+EGNGLS RTSG RPKKTRA MP+TQFSRP V
Subjt:  MLPDTFSQVIGRKASSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRPWV

KAA0035524.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]1.53e-4661.44Show/hide
Query:  MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRW
        MHLQ+RK  +L+DF   SQE+ SENA + VFSS  KK S    F  F            T KTST T  MLPDTFSQ IG+KASSL GE +CDPK+SK W
Subjt:  MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRW

Query:  PMLPTSGKLSSSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRPWV
        PMLPT  K SS ++NH KCTC E N LS RTS VRPKKTRARMP+TQFSRP V
Subjt:  PMLPTSGKLSSSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRPWV

KAA0057641.1 hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]8.72e-3756.21Show/hide
Query:  MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKA--SSLNGELKCDPKRSK
        M+LQRRK  +LKDF CSSQE+AS+NAPDS FSS  KKRS       + F   L I          H S  L  ++ +   R +  S L GEL CD K SK
Subjt:  MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKA--SSLNGELKCDPKRSK

Query:  RWPMLPTSGKLSSSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRP
        RWP+LPTSG+ SS +RNH K  C+EGNGLS RTSG RPKKTRARMP  QFSRP
Subjt:  RWPMLPTSGKLSSSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRP

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]2.24e-4144.87Show/hide
Query:  LQRRKWVQLKDFRCSSQEHASENAPDSVFSS--------------------------CDKKRSQ------------------------------------
        LQR K  +LKDFRCSSQE+A+E APDS+FSS                          CD KRS+                                    
Subjt:  LQRRKWVQLKDFRCSSQEHASENAPDSVFSS--------------------------CDKKRSQ------------------------------------

Query:  ------------------------TVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNH
                                TVS L F  VI+LSIF  RTP+TSTHT+ MLPD FS+ IG++ASSL GEL C+PKRSKRW MLPTS + SS +RNH
Subjt:  ------------------------TVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNH

Query:  QKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSR
         KCT  EGNGLS RT    PKKTRARMP+TQFSR
Subjt:  QKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSR

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]9.86e-4169.35Show/hide
Query:  DSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNHQKCTCNEGNGL
        DSVFSS  K  SQTVS L F  VISL IF   TP+TSTHT  MLPD FSQ IGR+ASSL GEL+CDPK  KRWPML TSG+LSS +RN+ K TC+E N L
Subjt:  DSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNHQKCTCNEGNGL

Query:  SFRTSGVRPKKTRARMPQTQFSRP
          RTS V PKKT ARMPQTQF RP
Subjt:  SFRTSGVRPKKTRARMPQTQFSRP

TrEMBL top hitse value%identityAlignment
A0A5A7UVV0 Uncharacterized protein6.6e-3156.21Show/hide
Query:  MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKA--SSLNGELKCDPKRSK
        M+LQRRK  +LKDF CSSQE+AS+NAPDS FSS  KKRS       + F   L I          H S  L  ++ +   R +  S L GEL CD K SK
Subjt:  MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKA--SSLNGELKCDPKRSK

Query:  RWPMLPTSGKLSSSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRP
        RWP+LPTSG+ SS +RNH K  C+EGNGLS RTSG RPKKTRARMP  QFSRP
Subjt:  RWPMLPTSGKLSSSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRP

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein5.7e-3544.44Show/hide
Query:  LQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRS---------------------------------------------------------------
        LQR K  +LKDFRCSSQE+A+E APDS+FSS  KKRS                                                               
Subjt:  LQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRS---------------------------------------------------------------

Query:  -----------------------QTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNH
                                TVS L F  VI+LSIF  RTP+TSTHT+ MLPD FS+ IG++ASSL GEL C+PKRSKRW MLPTS + SS +RNH
Subjt:  -----------------------QTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNH

Query:  QKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSR
         KCT  EGNGLS RT    PKKTRARMP+TQFSR
Subjt:  QKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSR

A0A5D3DFP2 Uncharacterized protein2.1e-2954.19Show/hide
Query:  MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQV--IGRKASS--LNGELKCDPKR
        MHLQRRK V+L+DFRCSSQE+ SENAPDS FSS  KKRS                                PD F  +  IG K+ S  + G      K 
Subjt:  MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQV--IGRKASS--LNGELKCDPKR

Query:  SKRWPMLPTSGKLSSSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRP
         +RWPMLPTSG+ SS +RN  KCTC EGNGLS RTSG RPKKTRARMPQTQFSRP
Subjt:  SKRWPMLPTSGKLSSSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRP

A0A5D3DIF8 Gag/pol protein2.8e-3469.35Show/hide
Query:  DSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNHQKCTCNEGNGL
        DSVFSS  K  SQTVS L F  VISL IF   TP+TSTHT  MLPD FSQ IGR+ASSL GEL+CDPK  KRWPML TSG+LSS +RN+ K TC+E N L
Subjt:  DSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNHQKCTCNEGNGL

Query:  SFRTSGVRPKKTRARMPQTQFSRP
          RTS V PKKT ARMPQTQF RP
Subjt:  SFRTSGVRPKKTRARMPQTQFSRP

A0A5D3E5W4 NBS-LRR type resistance protein4.7e-3761.44Show/hide
Query:  MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRW
        MHLQ+RK  +L+DF   SQE+ SENA + VFSS  KK S    F  F            T KTST T  MLPDTFSQ IG+KASSL GE +CDPK+SK W
Subjt:  MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRW

Query:  PMLPTSGKLSSSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRPWV
        PMLPT  K SS ++NH KCTC E N LS RTS VRPKKTRARMP+TQFSRP V
Subjt:  PMLPTSGKLSSSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRPWV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACTTGCAGCGAAGGAAATGGGTTCAGCTCAAGGACTTCCGGTGTTCATCCCAAGAACACGCAAGCGAGAATGCCCCAGACTCAGTTTTCTCGTCCTGCGATAAAAA
GCGGTCCCAGACGGTTTCTTTCCTTCGCTTCGCATTCGTCATAAGTCTTTCGATCTTCACGACACGTACTCCCAAGACTTCAACCCACACTTCTGTTATGCTCCCTGACA
CGTTTTCCCAAGTTATAGGTCGGAAAGCGAGCTCATTGAATGGAGAACTAAAGTGCGACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCAAACTCTCG
TCCAGTTTAAGAAACCACCAAAAATGCACTTGCAATGAAGGAAACGGGCTGAGCTTTAGGACTTCTGGTGTTCGTCCCAAGAAAACACGAGCAAGAATGCCCCAGACTCA
GTTTTCTCGTCCATGGGTAACATAG
mRNA sequenceShow/hide mRNA sequence
ATGCACTTGCAGCGAAGGAAATGGGTTCAGCTCAAGGACTTCCGGTGTTCATCCCAAGAACACGCAAGCGAGAATGCCCCAGACTCAGTTTTCTCGTCCTGCGATAAAAA
GCGGTCCCAGACGGTTTCTTTCCTTCGCTTCGCATTCGTCATAAGTCTTTCGATCTTCACGACACGTACTCCCAAGACTTCAACCCACACTTCTGTTATGCTCCCTGACA
CGTTTTCCCAAGTTATAGGTCGGAAAGCGAGCTCATTGAATGGAGAACTAAAGTGCGACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCAAACTCTCG
TCCAGTTTAAGAAACCACCAAAAATGCACTTGCAATGAAGGAAACGGGCTGAGCTTTAGGACTTCTGGTGTTCGTCCCAAGAAAACACGAGCAAGAATGCCCCAGACTCA
GTTTTCTCGTCCATGGGTAACATAG
Protein sequenceShow/hide protein sequence
MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRWPMLPTSGKLS
SSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRPWVT